PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G064800.1.p | ||||||||
Common Name | Glyma11g06940.1, LOC100810736 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 216aa MW: 25118.3 Da PI: 6.9546 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.8e-19 | 57 | 111 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++ q++ Le+ F ++r++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Glyma.11G064800.1.p 57 KKRKLSEVQVNLLEQNFGNERKLESERKDRLAMELGLDPRQVAVWFQNRRARWKN 111 567999***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 113.5 | 1.3e-36 | 56 | 148 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kkr+ls+ qv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk++++a e++ Le+ev +L+e+ Glyma.11G064800.1.p 56 NKKRKLSEVQVNLLEQNFGNERKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKNHEATLLEKCCLESEVLKLKEQ 145 59**************************************************************************************** PP HD-ZIP_I/II 91 lke 93 l+e Glyma.11G064800.1.p 146 LSE 148 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.086 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-16 | 55 | 116 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-18 | 56 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.85E-15 | 57 | 113 | No hit | No description |
Pfam | PF00046 | 1.9E-16 | 57 | 111 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-20 | 59 | 120 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.4E-5 | 83 | 92 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.4E-5 | 92 | 108 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MNHRPPFQDH MMLMSQLFPA DAYTQIISQQ GETNKKPRRR RNKKNKGGEN GASEANKKRK 60 LSEVQVNLLE QNFGNERKLE SERKDRLAME LGLDPRQVAV WFQNRRARWK NKKLEEEYSS 120 LKKNHEATLL EKCCLESEVL KLKEQLSEAE KEIQRLLESA ERVPSNSSSS SQSQSMEAVD 180 PPFFGEFGVD GYEDDVFYVP ETHYINGMEW INLYM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 59 | RRRNKKNKGGENGASEANKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.61529 | 0.0 | seed coat |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G064800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031168 | 0.0 | KT031168.1 Glycine max clone HN_CCL_119 homeodomain/HOMEOBOX transcription factor (Glyma11g06940.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537568.1 | 1e-160 | homeobox-leucine zipper protein ATHB-40 | ||||
Refseq | XP_028188451.1 | 1e-160 | homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 3e-68 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A0B2SB91 | 1e-158 | A0A0B2SB91_GLYSO; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A0K2CTA5 | 1e-158 | A0A0K2CTA5_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment) | ||||
TrEMBL | I1LHN6 | 1e-158 | I1LHN6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G06940.1 | 1e-159 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 | Representative plant | OGRP3776 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 7e-53 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G064800.1.p |
Entrez Gene | 100810736 |
Publications ? help Back to Top | |||
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