PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G043600.1.p | ||||||||
Common Name | GLYMA_11G043600, LOC100776539 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 314aa MW: 35168.9 Da PI: 6.728 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.7e-11 | 143 | 189 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ +++ L l+P + kK++ a++L A++Y+k+Lq Glyma.11G043600.1.p 143 DHIIAERKRREKLSQSLIALAALIPGL-----KKMDRASVLGNAIKYVKELQ 189 599************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.57 | 139 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.02E-15 | 142 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-14 | 143 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.12E-9 | 144 | 193 | No hit | No description |
Pfam | PF00010 | 2.5E-8 | 144 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-12 | 145 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MDDASEASWL SDLMLKETED CNLFRHSHLE TLLDDDDELL SHEIASAFEN LHQPLYSETF 60 ERSTKQPKTN ASSSPSSPTS KILLSFDNSS DSAALSPNQI KNKGVSVSVS LPQTRKRSSE 120 NHNFQTESPK GPRSYKSPSY ARDHIIAERK RREKLSQSLI ALAALIPGLK KMDRASVLGN 180 AIKYVKELQE RLRMLEEENK VMVNKAKLSC EDDIDGSASR EDEEGSERLP RVEARVSEKD 240 VLLRIHCQKQ KGLLLKILVE IQKFHLFVVS SSVLPFGDSI LDITIVAQME KGYNLTINDI 300 VKNLRVATLK SMS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 152 | ERKRRE |
2 | 148 | 153 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G043600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539216.1 | 0.0 | transcription factor bHLH25 isoform X1 | ||||
Refseq | XP_028189061.1 | 0.0 | transcription factor bHLH25-like | ||||
TrEMBL | A0A0B2PZP5 | 0.0 | A0A0B2PZP5_GLYSO; Transcription factor bHLH25 | ||||
TrEMBL | K7LN10 | 0.0 | K7LN10_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G04681.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF35935 | 2 | 2 | Representative plant | OGRP656 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G043600.1.p |
Entrez Gene | 100776539 |