PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G036400.1.p
Common NameGLYMA_11G036400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 277aa    MW: 30986.9 Da    PI: 6.309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G036400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.5e-21138188255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAaka+++a+ +l+g
  Glyma.11G036400.1.p 138 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYDRAAFRLRG 188
                          8********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-32137197IPR001471AP2/ERF domain
CDDcd000182.60E-32137196No hitNo description
PfamPF008471.1E-14138188IPR001471AP2/ERF domain
PROSITE profilePS5103224.223138196IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22138197IPR016177DNA-binding domain
SMARTSM003801.0E-37138202IPR001471AP2/ERF domain
PRINTSPR003671.3E-13139150IPR001471AP2/ERF domain
PRINTSPR003671.3E-13178198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MANALEVSAL NRIKLHLLGE LSPLTQFQEP NTTSLCSQSS TSDSFTTVDQ IFSEFLDFPT  60
TTTSSTEQNQ FSAFEFEPKP EIIEPQLEFS FPTTRCKSSR RPSLQISLPK KTEWIQFGEP  120
EVTETVSQSN PNAEEKKHYR GVRQRPWGKF AAEIRDPNKR GSRVWLGTFD TAIEAAKAYD  180
RAAFRLRGSK AILNFPLEAG ADDRKRQREE KVEPVLEVVK REKIGESDVS LIKNNPLTPS  240
SWLGFWGSDA NGIFTVPPLS PLSPHPALGF PQLMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-31137197161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-31137203470ATERF1
3gcc_A4e-31137203470ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.416510.0flower| hypocotyl| leaf| pod| root| seed coat
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G036400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959870.0BT095987.1 Soybean clone JCVI-FLGm-15G18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304366.20.0ethylene-responsive transcription factor 5-like protein
RefseqXP_028186914.10.0ethylene-responsive transcription factor 5-like
SwissprotO803412e-64EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A445HWI80.0A0A445HWI8_GLYSO; Ethylene-responsive transcription factor 5
TrEMBLI1LGT20.0I1LGT2_SOYBN; Uncharacterized protein
STRINGGLYMA11G03900.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.15e-53ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]