PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G035100.1.p
Common NameGLYMA_11G035100, LOC100817503
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 198aa    MW: 21978.6 Da    PI: 5.9678
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G035100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-184392255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr +k +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Glyma.11G035100.1.p 43 TYRGVRMRK-WGKWVSEIREPKK---KSRIWLGSFSTPEMAARAHDVAALTIKG 92
                         69*****99.**********854...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-124392IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3143101IPR001471AP2/ERF domain
SMARTSM003802.7E-3743106IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2143101IPR016177DNA-binding domain
PROSITE profilePS5103222.82743100IPR001471AP2/ERF domain
PRINTSPR003675.7E-104455IPR001471AP2/ERF domain
CDDcd000183.09E-3244102No hitNo description
PRINTSPR003675.7E-106682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEEEDNQVHN LTEEKKKSEN EEVSVESNDK KKKKRSSDGK HPTYRGVRMR KWGKWVSEIR  60
EPKKKSRIWL GSFSTPEMAA RAHDVAALTI KGTSAFLNFP ELASHLPRPL TTSPKDIQAA  120
AAKAAALNFE AQVEAQAQAQ LSIPSSSSEV EFPDLLLDSS HSAGEFDYSA PWLVAEAEHL  180
DLAFRLDDPP FPAWGSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1735100672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11434KKKSENEEVSVESNDKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G035100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150432e-77AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538748.11e-143dehydration-responsive element-binding protein 3
RefseqXP_028187101.11e-143dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD35e-49DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A445HWL01e-141A0A445HWL0_GLYSO; Dehydration-responsive element-binding protein 3
TrEMBLI1LGS41e-141I1LGS4_SOYBN; Uncharacterized protein
STRINGGLYMA11G03790.11e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]