PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G030600.1.p
Common NameGLYMA_11G030600, LOC100779370
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 361aa    MW: 41477.6 Da    PI: 7.3669
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G030600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.81.5e-5571381129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeelv++yL+kkv++k+++l ++ik+vd+yk+ePwdL++  k+ + ee+ewyfFs++dkky+tg+r+nratk+g+Wkatg
  Glyma.11G030600.1.p   7 VPPGFRFHPTDEELVDYYLRKKVASKRIDL-DIIKDVDLYKIEPWDLQElcKIGSdEENEWYFFSHKDKKYPTGTRTNRATKAGFWKATG 95 
                          69****************************.99**************954555553556******************************* PP

                  NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                          +dk+++s+ ++ l+g++ktLvfykgrap+g+k+dW+mheyrle
  Glyma.11G030600.1.p  96 RDKAIHSSpRHFLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 138
                          ******9877778****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-605158IPR003441NAC domain
PROSITE profilePS5100560.4677158IPR003441NAC domain
PfamPF023657.4E-298137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIDLDIIK DVDLYKIEPW DLQELCKIGS  60
DEENEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI HSSPRHFLIG MRKTLVFYKG  120
RAPNGQKSDW IMHEYRLETN QNGTTQEEGW VVCRVFKKRM TTVRKMGEYE SPCWYDDPAV  180
SFMQELESPS RISNPYASYH QHYPFKKELE LQFNIPHDAF LQLPQLESPK VPQSSTSLNC  240
SQVIPYGYGS NNNGNALQSL SLTQEEHIKQ HCQQQSLQFP YGSNDQAVDP ATDWRVLDKF  300
VASQLSHDQH FSKETSYSKV AEQIKLLANG CTKTEIGQEM ASTSTLPPPV ARLTCGNESL  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-51615914169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
UniprotTISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G030600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014619277.10.0NAC domain-containing protein 7
RefseqXP_028189376.10.0NAC domain-containing protein 7-like
SwissprotQ9FWX21e-137NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A445HW940.0A0A445HW94_GLYSO; NAC domain-containing protein 7
TrEMBLI1LGM40.0I1LGM4_SOYBN; Uncharacterized protein
STRINGGLYMA11G03340.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-139NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]