PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G025700.3.p
Common NameGLYMA_11G025700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 356aa    MW: 38652.8 Da    PI: 4.7121
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G025700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1149.6e-36251152101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++ ++lisw+e+g+sf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g++
  Glyma.11G025700.3.p  25 FLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGER 105
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                           ll++i+r+k
  Glyma.11G025700.3.p 106 ALLRDIQRRK 115
                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.7E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.31E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-3822114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.2E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAPLPAEQTG ESAPTELQRS IPTPFLTKTY QLVDDPSADD LISWNEDGTS FIVWRPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDCF RRGERALLRD IQRRKLLPVP  120
PAAAAPAAVT ANTVTVAVAA PAVRTVSPTT SGDEQVLSSN SSPIAGNNNN NTVHRTTSCT  180
TAPELLEENE RLRKENIQLS NELSQLKGLC NNILSLMTNY ASGFSRQQLE SSTSAVRTVP  240
VPDGKAPLEL LPAKHVSSAD DALHVGGAAG AAACATGNAA EAEVPKLFGV SIGLKRCRTE  300
CEAEPEGEDQ NQMQTRAQTQ SQSSQEPDHG SDVKSEPLDG DDSDYQDHDP HWLEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-272511429129Heat shock factor protein 1
5d5v_B3e-272511429129Heat shock factor protein 1
5d5v_D3e-272511429129Heat shock factor protein 1
5hdg_A2e-272511410110Heat shock factor protein 1
5hdn_A2e-272511410110Heat shock factor protein 1
5hdn_B2e-272511410110Heat shock factor protein 1
5hdn_C2e-272511410110Heat shock factor protein 1
5hdn_D2e-272511410110Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.280.0cotyledon
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G025700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963050.0JN896305.1 Glycine max heat shock transcription factor HSFB2b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590529.10.0heat stress transcription factor B-2b isoform X1
RefseqXP_014619265.10.0heat stress transcription factor B-2b isoform X1
RefseqXP_028190638.10.0heat stress transcription factor B-2b-like isoform X1
RefseqXP_028190639.10.0heat stress transcription factor B-2b-like isoform X1
SwissprotQ9T0D33e-97HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A445HWM80.0A0A445HWM8_GLYSO; Heat stress transcription factor B-2b isoform A
TrEMBLI1LGH50.0I1LGH5_SOYBN; Uncharacterized protein
STRINGGLYMA11G02800.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-78HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Czarnecka-Verner E,Yuan CX,Fox PC,Gurley WB
    Isolation and characterization of six heat shock transcription factor cDNA clones from soybean.
    Plant Mol. Biol., 1995. 29(1): p. 37-51
    [PMID:7579166]