PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G021200.1.p | ||||||||
Common Name | GLYMA_11G021200, LOC102669888 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 215aa MW: 24138.1 Da PI: 8.367 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.6 | 2.5e-28 | 123 | 179 | 2 | 57 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 +D ++WrKYGqK++kgs +prsYYrC+s+ gC ++k+vers+ dp v+++tY+ eH Glyma.11G021200.1.p 123 SDPWAWRKYGQKPIKGSAYPRSYYRCSSSkGCLARKHVERSQLDPGVLIVTYTAEHS 179 799************************998**************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-27 | 108 | 183 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.205 | 117 | 183 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-24 | 118 | 183 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-32 | 122 | 182 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.6E-23 | 124 | 179 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDWDLQAIVG CTKAPAATVM DNSHLMFFQH LCPEEQDDLL FNFQEFSETT TVVDELEELY 60 KPFYPPHVHV DNNNPLPIVA NSLPIPDEEV KELKPSHKAA SRCKKSKKQQ KNKRVVTAAD 120 GVSDPWAWRK YGQKPIKGSA YPRSYYRCSS SKGCLARKHV ERSQLDPGVL IVTYTAEHSD 180 PHPTCKNSQQ RNNSSTTTIA PATPRTHDGG GYRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-17 | 109 | 184 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-17 | 109 | 184 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G021200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-63 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006591525.1 | 1e-162 | WRKY transcription factor 22 | ||||
Refseq | XP_028187490.1 | 1e-162 | WRKY transcription factor 22-like | ||||
TrEMBL | K7LMM3 | 1e-161 | K7LMM3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G02361.1 | 1e-162 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6217 | 31 | 50 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 1e-32 | WRKY DNA-binding protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G021200.1.p |
Entrez Gene | 102669888 |