PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G019000.1.p
Common NameGLYMA_11G019000, LOC100779905
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 290aa    MW: 33022.4 Da    PI: 5.7888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G019000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.4e-20111161155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Glyma.11G019000.1.p 111 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAALVYDNAAIKLRG 161
                          59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-32111168No hitNo description
SuperFamilySSF541711.63E-21112168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-29112168IPR001471AP2/ERF domain
SMARTSM003801.6E-37112175IPR001471AP2/ERF domain
PROSITE profilePS5103223.261112169IPR001471AP2/ERF domain
PfamPF008475.8E-13112161IPR001471AP2/ERF domain
PRINTSPR003673.3E-10113124IPR001471AP2/ERF domain
PRINTSPR003673.3E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MTAPPTKYTH HTKLLIPPEE DPPKHHYPRL VRITVTDTDA TDSSSDEEEE QTYHCNSSTR  60
HRHRKFVNEI SIESCSSEND GVVSRKRIRR RSTTTPKATR ASDTRRVSDG KKFRGVRQRP  120
WGKWAAEIRD PARRVRLWLG TYDTAEEAAL VYDNAAIKLR GPHALTNFIT PPSGEETHCN  180
SKNIFSPTSV LHCCSLSEEA ESVTAKDDDY SSVSENKVKA ESAFPPEIDF EFRACSTVPE  240
SLLFCDDDWS SEFLNSYEDF GFKSWHTDRN RDFFQDIDDL FVSDPLLAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22108168162ATERF1
3gcc_A3e-22108168162ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.363883e-58hypocotyl| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G019000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150432e-71AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538682.10.0ethylene-responsive transcription factor CRF1
RefseqXP_028188618.10.0ethylene-responsive transcription factor CRF1-like
TrEMBLA0A445HVT10.0A0A445HVT1_GLYSO; Ethylene-responsive transcription factor CRF2
TrEMBLI1LGA60.0I1LGA6_SOYBN; Uncharacterized protein
STRINGGLYMA11G02140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-41cytokinin response factor 2