PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G018100.1.p | ||||||||
Common Name | GLYMA_11G018100, Glyma11g02050.1, LOC100815913 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 326aa MW: 35814.1 Da PI: 8.8961 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 136 | 186 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ge Glyma.11G018100.1.p 136 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 186 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.00E-17 | 135 | 195 | No hit | No description |
SMART | SM00380 | 1.0E-35 | 136 | 199 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.301 | 136 | 193 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-31 | 136 | 194 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-22 | 136 | 193 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.2E-10 | 137 | 148 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-13 | 137 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 159 | 175 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MEGMRDTKSQ LEIQDQEGTN IGSSLSKLIL ASGSGTNTLD SIFSNCPQTT NGSTSSNSVL 60 DDLEPFRSSG CESLGSSVYL RQRDILQKFY QESRGNGNNN GSYNIPRSLA NTSINSVCRS 120 SSLSCYSLTK PCKKKLYRGV RQRHWGKWVA EIRLPQNRMR VWLGTYDTAE AAAYAYDRAA 180 YKLRGEYARL NFPNLKDPTK LGFGDSARLN ALKSSVDAKI QAICQKVKKE RAKKNATKKK 240 LHDSSGSTDP NGGQKINSSS CSSSSLSQPL SPPSIFYDNW ANDLFSPASV STECQSMETE 300 ELFEGCSLAR LPSFDPELIW EVLAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 135 | 193 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.24163 | 0.0 | cotyledon| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G018100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031085 | 0.0 | KT031085.1 Glycine max clone HN_CCL_149 AP2-EREBP transcription factor (Glyma11g02050.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304391.2 | 0.0 | AP2-EREBP transcription factor | ||||
Refseq | XP_028188602.1 | 0.0 | ethylene-responsive transcription factor ERF061-like | ||||
Swissprot | Q9C7W2 | 1e-63 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A445HVN3 | 0.0 | A0A445HVN3_GLYSO; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | I1LG95 | 0.0 | I1LG95_SOYBN; AP2-EREBP transcription factor | ||||
STRING | GLYMA11G02050.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 1e-50 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G018100.1.p |
Entrez Gene | 100815913 |
Publications ? help Back to Top | |||
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