PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G016100.1.p
Common NameGLYMA_11G016100, LOC100819988
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 474aa    MW: 52975.8 Da    PI: 5.9507
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G016100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.79.5e-131494701374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lLl+ A++v++gdl++a+ +L+++s++as dgd+mqR+a+yf eALa r++r+++++ +al++++ +   +s+e+ ++klf+e+ P+
  Glyma.11G016100.1.p  49 LIHLLLAGANFVATGDLQNANLTLEQISQHASLDGDTMQRIASYFSEALADRILRTWPGIHRALNSNRIP--MVSDEILVQKLFFELLPF 136
                          689*************************************************************999998..59**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lkfs++++NqaI+ea+ege++vH+iD+++  ++QW+aLlq L++R+egpp+l+iTgv++    +ke l +++++L++ Ae+l++pf+fn+
  Glyma.11G016100.1.p 137 LKFSYILTNQAIVEAMEGEKMVHVIDLNAAGPAQWIALLQVLSARSEGPPHLKITGVHH----QKEVLDQMAHKLTEEAEKLDIPFQFNP 222
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll........................................................ 214
                           v ++le+l++e+L vk+gEala+++++qlh+ll                                                        
  Glyma.11G016100.1.p 223 -VLSKLENLDFEKLGVKTGEALAISSIMQLHSLLaldddasrrklpllsknsnaihlqkglltnqntlgdlldgyspspdsasasasssp 311
                          .799**********************************************************************************9998 PP

                 GRAS 215 .desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                           ++s+s++s  +++L+++++lsPkv+vv+eq+ +hn  + +er++eal  y+a fd+le++++r+s +rik+E++l+g+ei+n++aceg 
  Glyma.11G016100.1.p 312 aSSSASMNS--ESFLNALWGLSPKVMVVTEQDFNHNCLTMMERLAEALFSYAAYFDCLESTVSRASLDRIKLEKMLFGEEIKNIIACEGC 399
                          777777777..9****************************************************************************** PP

                 GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          er++rhe++ +W +rl+ +GF +vp+s++ + q ++ l++++ +gy+++ee g ++++W++rpL++++aW+
  Glyma.11G016100.1.p 400 ERKKRHERMDRWIQRLDFSGFANVPISYYGMLQGRRFLQTYGCEGYKMKEECGRVMMCWQERPLFFITAWT 470
                          **********************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.57923450IPR005202Transcription factor GRAS
PfamPF035143.3E-12849470IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MESMFQEEGS SSVTSSSSLQ FFSMMSLSLS PSLGSSPYQM KCEERGLVLI HLLLAGANFV  60
ATGDLQNANL TLEQISQHAS LDGDTMQRIA SYFSEALADR ILRTWPGIHR ALNSNRIPMV  120
SDEILVQKLF FELLPFLKFS YILTNQAIVE AMEGEKMVHV IDLNAAGPAQ WIALLQVLSA  180
RSEGPPHLKI TGVHHQKEVL DQMAHKLTEE AEKLDIPFQF NPVLSKLENL DFEKLGVKTG  240
EALAISSIMQ LHSLLALDDD ASRRKLPLLS KNSNAIHLQK GLLTNQNTLG DLLDGYSPSP  300
DSASASASSS PASSSASMNS ESFLNALWGL SPKVMVVTEQ DFNHNCLTMM ERLAEALFSY  360
AAYFDCLEST VSRASLDRIK LEKMLFGEEI KNIIACEGCE RKKRHERMDR WIQRLDFSGF  420
ANVPISYYGM LQGRRFLQTY GCEGYKMKEE CGRVMMCWQE RPLFFITAWT PRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-37394729381Protein SCARECROW
5b3h_A3e-37394728380Protein SCARECROW
5b3h_D3e-37394728380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.394040.0seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G016100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0950270.0BT095027.1 Soybean clone JCVI-FLGm-19K11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538672.10.0scarecrow-like protein 3
RefseqXP_028187455.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A445HVK60.0A0A445HVK6_GLYSO; Scarecrow-like protein 3
TrEMBLI1LG670.0I1LG67_SOYBN; Uncharacterized protein
STRINGGLYMA11G01850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3592222
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-178scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]