PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G010800.3.p
Common NameGLYMA_11G010800, LOC100797603
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 338aa    MW: 37550.8 Da    PI: 5.716
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G010800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.1e-2790172271
              E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Glyma.11G010800.3.p  90 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpingvstpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 172
                          689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.8E-1313337IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.9E-4685178IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.4E-3489172IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.9E-2591172IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.26E-2192173IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144585.18E-43177280IPR014889Transcription factor DP, C-terminal
SMARTSM011382.7E-69179335IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.02E-43179295No hitNo description
PfamPF087812.5E-42180295IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGTQPQQTFR EEEEEEMQGH GTTMSGQSMS TSRSVGSPSS RSEQTMATPA SDSTFLRLNH  60
LDIHGDDAGS QGTVAKKKKR GQRAVGGDKS GRGLRQFSMK VCEKVESKGR TTYNEVADEL  120
VAEFADPING VSTPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW KGLPRTSLSD  180
IEELKSERLG LRNRIEKKAA YLQELEEQYI GLQKLIQRNE QLYSSGNAPN GGVSLPFILV  240
QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNYVLKAM KFCERSQNDN TTDNSTDGGE  300
GSSIYAQVPT SVSNPPNRPP SSPPLPGILK ARVKNEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3883177193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.274950.0cotyledon| flower| leaf| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G010800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937950.0BT093795.1 Soybean clone JCVI-FLGm-17D20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537797.10.0transcription factor-like protein DPB isoform X1
RefseqXP_006590442.10.0transcription factor-like protein DPB isoform X1
RefseqXP_006590443.10.0transcription factor-like protein DPB isoform X1
RefseqXP_028191525.10.0transcription factor-like protein DPB
RefseqXP_028191526.10.0transcription factor-like protein DPB
RefseqXP_028191527.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-159DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A445HVV80.0A0A445HVV8_GLYSO; Transcription factor-like protein DPB isoform A
TrEMBLI1LFZ70.0I1LFZ7_SOYBN; Uncharacterized protein
STRINGGLYMA11G01270.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-150Transcription factor DP