PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G009400.1.p | ||||||||
Common Name | GLYMA_11G009400, LOC100808232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 33161.1 Da PI: 6.7447 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.7 | 6.3e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++lvd ++++G g+W++ +r g++R++k+c++rw +yl Glyma.11G009400.1.p 15 KGPWSPEEDKILVDFIEKHGHGSWRALPRLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2.1e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++l+++++ lG++ W++Ia++++ gRt++++k+ w+++l Glyma.11G009400.1.p 68 RGKFSDEEEQLIINLHSVLGNK-WAAIASHLP-GRTDNEIKNLWNTHL 113 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.473 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.26E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.73E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.35 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.46E-11 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-27 | 70 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MMRTPISSDE SGLKKGPWSP EEDKILVDFI EKHGHGSWRA LPRLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSDEEEQLII NLHSVLGNKW AAIASHLPGR TDNEIKNLWN THLKKKLMQM 120 GLDPVTHRPR THHLNLLSNL QQILALIRLQ SDANKLQLLQ NIFEASNSDP LPDSSYSLLN 180 DVLGGLNNLH SNDLHNLYDG NSLSVQNFDQ NLNGGRNAEP SPSSNSLPNL VSASPDRSPV 240 VKEAQNILVN SKDFSTSAFE LTWGDFMDEE ETNQTYWKGF MDQHSNQTWS TFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G009400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 4e-82 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538653.3 | 0.0 | transcription factor MYB92 | ||||
Refseq | XP_028188999.1 | 0.0 | transcription factor MYB92-like | ||||
Swissprot | Q9SBF3 | 1e-79 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A445HV90 | 0.0 | A0A445HV90_GLYSO; Transcription factor MYB92 | ||||
TrEMBL | I1LFY0 | 0.0 | I1LFY0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G01150.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-80 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G009400.1.p |
Entrez Gene | 100808232 |
Publications ? help Back to Top | |||
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