PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G003400.2.p
Common NameGLYMA_11G003400, LOC100782240
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 687aa    MW: 75294.3 Da    PI: 6.4555
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G003400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.4e-181772156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++  +++t+ q+ee+e++F++ ++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Glyma.11G003400.2.p 17 KKGYRRHTQRQIEEMEAFFKQFPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 72
                         577889***********************************************999 PP
2START211.14.1e-662044241206
                          HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela +a++el ++a+a++p+Wv s    e++n++e+l++f+  +        ++ea+r+s+vv+m++ +l  +l+d++ qW++ +     
  Glyma.11G003400.2.p 204 ELAVAAMEELTRLAQAGDPLWVPSNhhsEILNEEEYLRTFPNRGLgpkplgLRSEASRESVVVIMNHINLIDILMDVN-QWSTVFCgivs 292
                          57899***********************************77666*********************************.******99999 PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +a tlev+s+g      galq+m++e+q++splvp R+ +fvRy++q+++g w++vdvS+d+ ++++    + R++++pSg+li++++ng
  Glyma.11G003400.2.p 293 RALTLEVLSTGvagnynGALQVMSSEFQVPSPLVPtRENYFVRYCKQQPDGIWAVVDVSLDNLRPNT----ISRSRRRPSGCLIQELPNG 378
                          ******************************************************************9....69***************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +skvtw+ehv++++r +h+++r+lv+sgla+gak+wvatl+rqce+
  Glyma.11G003400.2.p 379 YSKVTWIEHVEVDDRAVHSIYRPLVNSGLAFGAKRWVATLDRQCER 424
                          ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-20572IPR009057Homeodomain-like
SuperFamilySSF466891.3E-17674IPR009057Homeodomain-like
PROSITE profilePS5007116.5361474IPR001356Homeobox domain
SMARTSM003893.7E-171678IPR001356Homeobox domain
CDDcd000861.94E-171775No hitNo description
PfamPF000464.7E-161772IPR001356Homeobox domain
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PROSITE profilePS5084845.407195427IPR002913START domain
SuperFamilySSF559613.98E-37196426No hitNo description
CDDcd088753.99E-124199423No hitNo description
SMARTSM002341.3E-68204424IPR002913START domain
PfamPF018527.0E-56205424IPR002913START domain
Gene3DG3DSA:3.30.530.207.7E-6306424IPR023393START-like domain
SuperFamilySSF559612.0E-24445675No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MDAPSGDDQD PNPRPKKKGY RRHTQRQIEE MEAFFKQFPH PDDKQRKELS RELGLEPLQV  60
KFWFQNKRTQ MKTQHERNEN AILKTENEKL RAENNRYKEA LSNATCPNCG GSAALGEMSF  120
DEQHLRIENA RLREEIDRIS GIAAKYVGKP VTSSYSNLSS LNNNHVPVGK YGSQSGTVGE  180
MYGGSDLFRS LPAPADADKP MIVELAVAAM EELTRLAQAG DPLWVPSNHH SEILNEEEYL  240
RTFPNRGLGP KPLGLRSEAS RESVVVIMNH INLIDILMDV NQWSTVFCGI VSRALTLEVL  300
STGVAGNYNG ALQVMSSEFQ VPSPLVPTRE NYFVRYCKQQ PDGIWAVVDV SLDNLRPNTI  360
SRSRRRPSGC LIQELPNGYS KVTWIEHVEV DDRAVHSIYR PLVNSGLAFG AKRWVATLDR  420
QCERLASSMA NNIPAGDLCV ITSAEGRKSM MKLAERMVMS YCTGVGASTA HAWTTLSATG  480
CDDVRVMTRK STDEPGRPPG IVLSAATSFW LPVPPNRVFD FLRDENSRNE WDILSNGGLV  540
QELAHIANGR DPGNCVSLLR VNSANSSQSN MLILQESCTD STGSYVVYAP VDIVAMNVVL  600
SGGDPDYVAL LPSGFAILPD GPPALNGGPM HEVGSGGSLL TVGFQILVDS APTAKLSLGS  660
VATVNSLIKC TVERIKVAVI RDNNNT*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the apical cell after the first asymmetric division of the zygote. Expressed in all proembryo cells until the eight-cell stage, and then restricted to the protoderm in the 16-cell proembryo. Not detected in the torpedo stage, but reappeared later in the L1 layer of the shoot apical meristem in the mature embryo. After germination, the L1 layer-specific expression pattern is maintained in the vegetative shoot apical meristem, inflorescence, floral meristems, and the young floral organ primordia. Finally, expressed in the protoderm of the ovule primordia and integuments and gradually restricted to the endothelium surrounding the embryo sac. {ECO:0000269|PubMed:10571886, ECO:0000269|PubMed:8989876}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G003400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-157AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538765.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_006590391.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_028188835.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028188836.10.0homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A445HV090.0A0A445HV09_GLYSO; Homeobox-leucine zipper protein MERISTEM L1 isoform A
TrEMBLK7LMB00.0K7LMB0_SOYBN; Uncharacterized protein
STRINGGLYMA11G00570.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]