PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.10G289900.2.p

Common Name

GLYMA_10G289900, LOC100815539

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WOX

Protein Properties

Length: 282aa MW: 31687.3 Da PI: 6.6046

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G289900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.9	6.3e-22	89	149	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+e+++e++++l +++e++V++WFqNrRa+ k+ Glyma.10G289900.2.p 89 RQRWTPTPVQLQILERIFDQgNGTPSKEKIKEITAELgqhgQISETNVYNWFQNRRARSKR 149 89***************99************************************97 PP
2	Wus_type_Homeobox	102	4.3e-33	88	150	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtPtp Q++iLe+++++G tP+ke+i++itaeL ++G+i+++NV++WFQNr+aR+++k Glyma.10G289900.2.p 88 SRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRK 150 789***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-18	83	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.289	85	150	IPR001356	Homeobox domain
SMART	SM00389	8.8E-16	87	154	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.92E-19	87	152	IPR009057	Homeodomain-like
CDD	cd00086	4.60E-15	89	150	No hit	No description
Pfam	PF00046	9.1E-20	89	149	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MVNVVELQKQ LQSGNVNVDA NGELMYVKVM TDEQLETLRK QIAVYGTICE QLIEMHRTLS 60 AQQDLAGVRL GNIYCDPLMT SGGHKITSRQ RWTPTPVQLQ ILERIFDQGN GTPSKEKIKE 120 ITAELGQHGQ ISETNVYNWF QNRRARSKRK LQNVAAYSNT ESEVETEVDS KDKKTKAEEE 180 FQSQHNNNIS TTSGGAEKLC FQNPQVHSDY LQYLNPADSN KPYSMFQTDD NLKSTRNLSH 240 VSVFNEVLSN SRSEHIGGKM EVGGSVSYNL FHQTGHFNLA G*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.41537	0.0	pod

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G289900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003536766.1	0.0	WUSCHEL-related homeobox 13
Swissprot	O81788	1e-82	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	K7LM25	0.0	K7LM25_SOYBN; Uncharacterized protein
STRING	GLYMA10G43580.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-85	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Glyma.10G289900.2.p
Entrez Gene	100815539

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]