PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G285900.1.p | ||||||||
Common Name | GLYMA_10G285900, LOC100799005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 247aa MW: 26038.1 Da PI: 10.5886 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124 | 1.6e-38 | 26 | 202 | 2 | 115 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsss 87 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as++ + + +a+ +s Glyma.10G285900.1.p 26 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSsvslS----VRAAA-NSL 110 78**************************************************************9999977733331....22222.222 PP TCP 88 g..................................................................kaaksaakskksqksaasalnla 111 + +aa++ + + sq+++a + +a Glyma.10G285900.1.p 111 SspsstsdhkpqllsptpfilgkrirtdedsskdeavsvgpslvgpstppglwalparpdfgqiwsfAAAAAPEMVSVSQQQQA--SLFA 198 223333445566666666666666666666666666666677777777777777776666666665433333333333333333..4444 PP TCP 112 kesr 115 +++r Glyma.10G285900.1.p 199 HHHR 202 4444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.209 | 32 | 86 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.6E-33 | 32 | 178 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSNSDATTNG VSNGAIIDAQ RQQALAVKKP PSKDRHSKVD GRGRRIRMPI ICAARVFQLT 60 RELGHKSDGQ TIEWLLRQAE PSIIAATGSG TTPASFSSVS LSVRAAANSL SSPSSTSDHK 120 PQLLSPTPFI LGKRIRTDED SSKDEAVSVG PSLVGPSTPP GLWALPARPD FGQIWSFAAA 180 AAPEMVSVSQ QQQASLFAHH HRQQQQQAIG EASAARVGNY LPGHLNLLAS LSGGPGNSGR 240 RDDEPR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.20745 | 0.0 | cotyledon| hypocotyl| leaf| root| seed coat| somatic embryo |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G285900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003536737.1 | 1e-178 | transcription factor TCP7 | ||||
Refseq | XP_028184426.1 | 1e-178 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 3e-98 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A445IU40 | 1e-177 | A0A445IU40_GLYSO; Transcription factor TCP7 | ||||
TrEMBL | I1LF87 | 1e-177 | I1LF87_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G43190.1 | 1e-178 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 | Representative plant | OGRP8514 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 4e-92 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G285900.1.p |
Entrez Gene | 100799005 |