PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G281800.1.p
Common NameGLYMA_10G281800, LOC100798282
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 572aa    MW: 64915.8 Da    PI: 4.8494
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G281800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.1e-13337380755
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           +Er+RR+++N+++ +Lr+l+P  +      Kl+ a+iL  A+eY+k+Lq
  Glyma.10G281800.1.p 337 VAERKRRKKLNDRLYNLRSLVPRiS------KLDRASILGDAIEYVKDLQ 380
                          68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.7E-199156IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.59E-13329384No hitNo description
PROSITE profilePS5088815.866330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-17333392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-16336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-17337393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10337380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.642465537IPR002912ACT domain
CDDcd048732.11E-4466529No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MNISMQHLVE RLRPLVGLNG WDYCIYWKLS EDQRFLEWLG CCCAGTESNQ NAGEEHLFPV  60
SSVASCRDIT YPHPRTKPCD LLSQLSTCIP IDNSGIHAQT LLTNQPNWVN YSNGMDPNIL  120
EETIGTQVLI SVPGGLVELF VTKQVSEDHQ LIDFVTNQCI EAVNHSMSFN IDVSNMQSNP  180
LIQDENEGNN NRNNNHLFHP SEHVITDMDH RNIGLCNSQL NFMQQFNYNQ HNRMKSDAAF  240
SEEYQAGNSF LHDEQTNPED DQEPGHEHDT YQKSLMTTDS QYVEAKDQKQ EEDKDLMKNV  300
VGRSDSMSDC SDQNEEEELD GKYRRRNGKG NQSKNLVAER KRRKKLNDRL YNLRSLVPRI  360
SKLDRASILG DAIEYVKDLQ KQVKELQDEL EENADTESNC MNIGVGAELG PNAEHDKAQT  420
GLHVGTSGNG YVSKQKQEGA TVIDKQTQQM EPQVEVALID ENEYFVKVFC EHRPGGFVKL  480
MEALNTIGMD VVHATVTSHT GLVSNVFKVE KKDNETVEAE DVRDSLLELT RNRYRGWTHE  540
MTATPENGVG RDQHQLHNHQ QIGAYPHQFH S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323344RRRNGKGNQSKNLVAERKRRKK
2338345ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G281800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535752.10.0transcription factor ABORTED MICROSPORES isoform X2
RefseqXP_006589725.10.0transcription factor ABORTED MICROSPORES isoform X2
RefseqXP_025979977.10.0transcription factor ABORTED MICROSPORES isoform X2
TrEMBLI1LF470.0I1LF47_SOYBN; Uncharacterized protein
STRINGGLYMA10G42830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Representative plantOGRP37041323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-147bHLH family protein