PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G281200.1.p
Common NameGLYMA_10G281200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 368aa    MW: 42586 Da    PI: 10.1184
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G281200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.7e-132342864395
                          S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3  43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           ++W v++  +++s++++l++GW +Fvk+n+Lk g ++v++ +++ + +++v 
  Glyma.10G281200.1.p 234 EKTWHVNFYLNRSSKQIILGAGWGDFVKDNNLKIGNVCVLEQIKKPGISFRVV 286
                          599*****88*******************************777655555555 PP
2B331.62.9e-103003613395
                          -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3  33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          + +++l+   + sW v+l ++ k + + lt GW++F +a +Lk+gD++ ++l+++++f + v+
  Glyma.10G281200.1.p 300 PAKVILRV-GNGSWPVRLDHCPKHSYCRLTFGWSNFMSACKLKAGDVCNLELVNKDRFVFQVR 361
                          44555554.5579*****777777779*************************98888855554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.7428101IPR003340B3 DNA binding domain
SMARTSM010190.001416101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-1420101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-1521101IPR015300DNA-binding pseudobarrel domain
CDDcd100175.19E-82499No hitNo description
SuperFamilySSF1019363.34E-13213289IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-9234280IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-10234286IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.292235291IPR003340B3 DNA binding domain
CDDcd100173.21E-11235289No hitNo description
SMARTSM010197.2E-5273364IPR003340B3 DNA binding domain
CDDcd100172.14E-12280361No hitNo description
SuperFamilySSF1019362.94E-12287365IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-11287362IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-8299361IPR003340B3 DNA binding domain
PROSITE profilePS508639.178311364IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MYGIGDIIEN SNAYEALQCK NIQRIPRSFV NKCWEGISNP VVLVLPNGAE WKVNWKRLDL  60
DVWLIDEWKK FAQVLSLDKD HLMVFRYVGN SQFQVVILDQ SGLEVGYPLI NATLDGEETG  120
NVFHQRKKRA KSPLPISPST KRVKTNPRKE PTNPGQDVET RHAESERTKA KKRGRRRMMY  180
ANKRCSKSKA FQSEELLEDN ESSTALERAN SFRFENPFFI RQMYPSYIQK HFMEKTWHVN  240
FYLNRSSKQI ILGAGWGDFV KDNNLKIGNV CVLEQIKKPG ISFRVVIYRY LEESNPSKFP  300
AKVILRVGNG SWPVRLDHCP KHSYCRLTFG WSNFMSACKL KAGDVCNLEL VNKDRFVFQV  360
RVARCIH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G281200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211029.21e-132B3 domain-containing transcription factor VRN1-like
TrEMBLK7LLX50.0K7LLX5_SOYBN; Uncharacterized protein
STRINGGLYMA10G42774.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14649515
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-20B3 family protein