PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G277800.1.p | ||||||||
Common Name | 1-3-1A, GLYMA_10G277800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 234aa MW: 26517.5 Da PI: 6.6394 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44 | 5e-14 | 119 | 163 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Glyma.10G277800.1.p 119 PWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKY 163 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.069 | 10 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.45E-10 | 12 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.97E-5 | 14 | 60 | No hit | No description |
PROSITE profile | PS50090 | 6.226 | 14 | 60 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-4 | 34 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.947 | 112 | 168 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.21E-17 | 114 | 169 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-17 | 115 | 167 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.2E-11 | 116 | 162 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-11 | 116 | 166 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.68E-9 | 119 | 164 | No hit | No description |
Pfam | PF00249 | 6.3E-12 | 119 | 163 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MFQESSVTRW PTQWTRYHDK LFERALLVVP EDLPDRWEKI ADQVPGKSAV EVREHYEALV 60 HDVFEIDSGR VEVPSYVDDS VAMPPSGGAG ISTWDNANQI SFGSKLKQQG ENERKKGTPW 120 TEEEHRLFLI GLSKFGKGDW RSISRNVVVT RTPTQVASHA QKYFLRQNSV KKERKRSSIH 180 DITTVDSNSA PMPIDQTWVP PPGGSLQQSQ QYPSSNMHDQ MGTFGYSNYG FDM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-13 | 14 | 76 | 11 | 73 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.193 | 0.0 | flower| meristem| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 19911576 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G277800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB083027 | 0.0 | AB083027.1 Glycine max mRNA for syringolide-induced protein 1-3-1A, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237360.1 | 1e-174 | syringolide-induced protein 1-3-1A | ||||
Swissprot | Q9FNN6 | 2e-58 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | Q8S900 | 1e-173 | Q8S900_SOYBN; Syringolide-induced protein 1-3-1A | ||||
STRING | GLYMA10G42450.1 | 1e-174 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 5e-82 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G277800.1.p |
Entrez Gene | 548010 |
Publications ? help Back to Top | |||
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