PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G274300.1.p | ||||||||
Common Name | COL22, GLYMA_10G274300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CO-like | ||||||||
Protein Properties | Length: 420aa MW: 46895.4 Da PI: 5.4036 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.7 | 2.7e-09 | 17 | 60 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k+++++C ++ +lC+ C ++ H+ H++v Glyma.10G274300.1.p 17 ARACDSCITKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 60 578*****************************667888888876 PP | |||||||
2 | CCT | 68.1 | 2.4e-23 | 364 | 407 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a Glyma.10G274300.1.p 364 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 407 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.907 | 15 | 62 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.9E-10 | 15 | 62 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.0E-8 | 17 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.19E-9 | 18 | 62 | No hit | No description |
Pfam | PF06203 | 7.0E-18 | 364 | 406 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.083 | 364 | 406 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MSSATKNAAN AVGAKTARAC DSCITKRARW YCAADDAFLC QACDSSVHSA NPLARRHERV 60 RLKTASYKST DEQQQQQQQQ PPTWHTKKPR TPRHGKHSRN NNPFHLVPEE GSEEANSHDE 120 NEEQLLYRVP IFDPFVAELC GTNSSPSPVT STDQGVVAAA EVEYKGFQSN GFCSNSSEME 180 NLHGMLPSDA ELAEFAADVE SLLGRGLENE CVGMEELGLV DAKEEECSVG SGKVKMEDQE 240 ESPLVEMEMD MVVGRDDQSF ELSFDYETCE EVKVCDLGLG NELGAKKEND DEVKKNKISL 300 QLDYEAVIIA WASQKSPWTT ADKPNLDPDE CWKQCMGSCE TAYHHPCGEM GGFGIHPVII 360 DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRASFA PPTFPLLNK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 374 | 390 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G274300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM068904 | 0.0 | HM068904.1 Glycine max CONSTANS-like zinc finger protein (COL22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001278940.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | I1LEW9 | 0.0 | I1LEW9_SOYBN; CONSTANS-like zinc finger protein | ||||
STRING | GLYMA10G42090.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 | Representative plant | OGRP802 | 16 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-100 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G274300.1.p |
Entrez Gene | 100782921 |