PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G260400.1.p
Common NameGLYMA_10G260400, LOC100306715
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-PHD
Protein Properties Length: 821aa    MW: 90166.6 Da    PI: 4.7067
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G260400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.93.9e-146867311156
                          HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++L + F++n+yp+++++e LA++lgLt +qV  WF N R   +
  Glyma.10G260400.1.p 686 VVQRLHKSFKENQYPDRTTKESLAQELGLTYQQVAKWFGNTRWSFR 731
                          6799**************************************8766 PP
2PHD37.26.8e-13343398151
                          SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C+ C++    ++++++lCdg C++ fH+ Cl+++  +e++p g   wlC+ C++k
  Glyma.10G260400.1.p 343 FCAKCQSkeLSTNNDIILCDGvCDRGFHQLCLDPPMLTEDIPPGdeGWLCPGCDCK 398
                          699***977777********77********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.1E-13333401IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.5E-12340397IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.798341398IPR019787Zinc finger, PHD-finger
PfamPF006282.0E-10343398IPR019787Zinc finger, PHD-finger
CDDcd155041.15E-28343395No hitNo description
SMARTSM002496.9E-10343396IPR001965Zinc finger, PHD-type
PROSITE patternPS013590344395IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007113.604673733IPR001356Homeobox domain
SMARTSM003895.0E-13675737IPR001356Homeobox domain
SuperFamilySSF466891.33E-13676736IPR009057Homeodomain-like
PfamPF000461.1E-11686731IPR001356Homeobox domain
CDDcd000866.53E-13687734No hitNo description
Gene3DG3DSA:1.10.10.602.7E-14687736IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MASPTGELTS HNDGTTDRMG TEQCELSEKT PQIGSEGLEN EQKELGTELT SSVIEEKSNQ  60
VSAIVTENAV IQLPEPLQHD LQKNCQTVEG SCLEQSTVEQ VTVDLSNDKP ENKCKPLSEN  120
VQSEPVESIP AVVVEGQMQS NPSQANMSSV NELLDQPSGD AVNNISSNCS EKMSNSPTHS  180
QSRRKGKKNS KLLKKYMLRS LGSSDRALRS RTKEKPKEPE PTSNLVDGNN NGVKRKSGRK  240
KKKRKEEGIT NQFSRIRSHL RYLLNRISYE NSLIDAYSGE GWKGYSIEKL KPEKELQRAK  300
SEILRRKLKI RDLFQNLDSL CAEGKFPESL FDSAGEIDSE DIFCAKCQSK ELSTNNDIIL  360
CDGVCDRGFH QLCLDPPMLT EDIPPGDEGW LCPGCDCKDD CMDLVNDSFG TSLSISDTWE  420
RVFPEAASFA GNNMDNNSGV PSDDSDDDDY NPNGPDDVKV EGDESSSDES EYASASEKLE  480
GGSHEDQYLG LPSEDSDDGD YDPDAPDVEC KVNEESSSSD FTSDSEDLAA AIEDNTSPGQ  540
DGGISSSKKK GKVGKKLSLP DELSSLLEPD SGQEAPTPVS GKRHVERLDY KKLYEETYHS  600
DTSDDEDWND TAAPSGKKKL TGNVTPVSPN GNASNNSIHT PKRNAHQNNV ENTNNSPTKS  660
LEGCSKSGSR DKKSGSSAHK RLGEAVVQRL HKSFKENQYP DRTTKESLAQ ELGLTYQQVA  720
KWFGNTRWSF RHSSQMETNS GINASQQVTD GRAENEGEKE CELISLEFSG EKSKTPNSRK  780
RKHLSEPLSE AQLDINGSAA SSPNVHLTQI GNKMKTRKRK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186194KKNSKLLKK
2238243RKKKKR
3238244RKKKKRK
4238245RKKKKRKE
5239244KKKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.420790.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the outer layers of globular embryos. {ECO:0000269|PubMed:15094187}.
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, panicle and seeds. {ECO:0000269|PubMed:21951842}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269|PubMed:21951842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G260400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:21951842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0909550.0BT090955.1 Soybean clone JCVI-FLGm-5D8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589630.10.0homeobox protein HAT3.1
SwissprotQ8H9911e-138HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBLK7LLH50.0K7LLH5_SOYBN; Uncharacterized protein
STRINGGLYMA10G40641.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.19e-95Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW
    Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1.
    J Integr Plant Biol, 2011. 53(11): p. 869-78
    [PMID:21951842]