PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G254800.1.p
Common NameGLYMA_10G254800, LOC100794751
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27796 Da    PI: 10.4394
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G254800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.91.3e-231664149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         k+ +n+sn qvtfskRrng++KKA+EL++LC+++va+++fs+ +k++ +
  Glyma.10G254800.1.p 16 KKMSNESNLQVTFSKRRNGLFKKASELCTLCGTDVALVVFSPGQKVFSF 64
                         5689*****************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.642868IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-32867IPR002100Transcription factor, MADS-box
CDDcd002659.64E-37977No hitNo description
SuperFamilySSF554552.88E-28982IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-191030IPR002100Transcription factor, MADS-box
PfamPF003197.9E-251864IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-193045IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-194566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSGPKKSRGR QKIEMKKMSN ESNLQVTFSK RRNGLFKKAS ELCTLCGTDV ALVVFSPGQK  60
VFSFGHPNVD AVIDRYLARP PPTDSGTMQI IEAHRMAHVH DLNVQLTQIN NQLDHERKRT  120
NELNLMNKEA QAQMWWARPV DGMSMAQVKQ FKAALEEMKK QVARLVDRAM LQSVTNPTLQ  180
FFPGVSSSSN SNLVHQPHPL PAPQVFTPHL IQPPMLQNFM FHDGSMMRHH GFDNIGMGGY  240
GPTAGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A5e-17991284MEF2 CHIMERA
6bz1_B5e-17991284MEF2 CHIMERA
6bz1_C5e-17991284MEF2 CHIMERA
6bz1_D5e-17991284MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G254800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535675.10.0agamous-like MADS-box protein AGL62
TrEMBLI1LEB50.0I1LEB5_SOYBN; Uncharacterized protein
STRINGGLYMA10G40080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-63AGAMOUS-like 62