PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.10G254700.1.p | ||||||||
Common Name | LOC100794229 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 248aa MW: 26765.8 Da PI: 7.2738 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.1 | 4.2e-22 | 2 | 47 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n++n qvtfskRr g++KKA+EL++LC+a+va+++fs+ k++ + Glyma.10G254700.1.p 2 SNDINLQVTFSKRRSGLFKKASELCTLCGANVALVVFSPGEKVFSF 47 79**************************************999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.17 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.9E-22 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.04E-30 | 1 | 61 | No hit | No description |
SuperFamily | SSF55455 | 6.02E-24 | 2 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-23 | 2 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-10 | 13 | 28 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-10 | 28 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MSNDINLQVT FSKRRSGLFK KASELCTLCG ANVALVVFSP GEKVFSFGHP SVDGVIERYL 60 KRGPPPEAGN MHYMAKVIEL HGQLTHINDQ LEAERKHAEK LNRKQKEAEA QLWWARPVEG 120 MIIMENLEKL KKAFEELKQQ VAGLADMALS QSVANGNPGH QFFPGASSSA IPNVVLQPTS 180 LPVVQVLPPV THMMLPPPPM MFQNYTLPDH GSMIMNPNGF NNDMGMGGGG AFGVPGPSSA 240 GAGGDFF* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.10G254700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535674.1 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0R0I6S8 | 0.0 | A0A0R0I6S8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G40070.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-39 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.10G254700.1.p |
Entrez Gene | 100794229 |