PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G254600.1.p
Common NameGLYMA_10G254600, LOC100793705
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25458.1 Da    PI: 9.9593
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G254600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF611.4e-191865249
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +i  ks  qvtfskRr g++KKA+EL +LC++e+av++fs+ +k + +
  Glyma.10G254600.1.p 18 KIPKKSHLQVTFSKRRSGLFKKASELRTLCGVEIAVVVFSPADKAFSF 65
                         57789999*********************************9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-27968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.1969IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-251090IPR002100Transcription factor, MADS-box
CDDcd002655.25E-311077No hitNo description
PRINTSPR004041.1E-161131IPR002100Transcription factor, MADS-box
PfamPF003191.0E-221865IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-163146IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-164667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSKNKKSSLG RQKIPIEKIP KKSHLQVTFS KRRSGLFKKA SELRTLCGVE IAVVVFSPAD  60
KAFSFGHPEV ESLIDRYTTR NPPQESSAHH LVEAHRNANV RDLNMQLSQV FNHLEIEKKR  120
GDDLDHARKA RQRQFWWESP IDELGLNELL QLKASIEELK LNIEKHASKF MIEHSSNIPS  180
SSLLGPNNGL GPLACYDTFE NKPGPGIGIA PSIPNAHYLA FRTGYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-18994187MEF2C
5f28_B8e-18994187MEF2C
5f28_C8e-18994187MEF2C
5f28_D8e-18994187MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}.
UniprotTISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G254600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535673.11e-168agamous-like MADS-box protein AGL62
SwissprotQ9FKK23e-51AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLK7LLE51e-166K7LLE5_SOYBN; Uncharacterized protein
STRINGGLYMA10G40060.21e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-53AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]