PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G244000.1.p
Common NameGLYMA_10G244000, LOC100811941
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 367aa    MW: 42698 Da    PI: 4.5582
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G244000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.7e-35451372103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+i++d+++++++sws+ +nsfvv+d++ f+ ++Lpk+Fkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +g++
  Glyma.10G244000.1.p  45 FLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSVTLLPKFFKHNNFSSFVRQLNTYGFKKVDPDK---------WEFANEMFLRGQR 125
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                           ll++i+r+k +
  Glyma.10G244000.1.p 126 ILLKNIRRRKAN 137
                          *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.3E-3541134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-6041134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.7E-3841134IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.3E-194568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.8E-3145134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MNPHGLVKEE FLGESSSFCG GYDPQPIMVV PQPIEGLHET GPPPFLTKTY DIVDDPSTNH  60
IVSWSTGNNS FVVWDPQAFS VTLLPKFFKH NNFSSFVRQL NTYGFKKVDP DKWEFANEMF  120
LRGQRILLKN IRRRKANHHQ SHQHAMQQGV EEPFVEVGQF ELDGEIDRLR RDRQVLMVEL  180
VKLRQQQQST KSHLQEMEGR IKMTEQKQKQ MMNFLARAMQ NPNFVQQLAQ QKEWRKELEE  240
VFSNKKRRPI DQGPNVVEVA DDDDELLGCA EECSDFVKLE PQEYYSDDKV LEFEVPDLDL  300
ALNLDEENIE SQKRIMEEEH VQLENSRERY IDEVFWQDLL NEGIEDQGVL GVEDVDVLAK  360
QLGYLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-243613417129Heat shock factor protein 1
5d5v_B2e-243613417129Heat shock factor protein 1
5d5v_D2e-243613417129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G244000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340376.10.0heat stress transcription factor 23
RefseqXP_028185296.10.0heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-123HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A445IS770.0A0A445IS77_GLYSO; Heat stress transcription factor A-6b
TrEMBLK7LL720.0K7LL72_SOYBN; Uncharacterized protein
STRINGGLYMA10G38930.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-121heat shock transcription factor A6B