PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G240900.1.p | ||||||||
Common Name | GLYMA_10G240900, LOC100802197 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26805.6 Da PI: 9.0357 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.3 | 2.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+nk+nrqvtfskRrng+lKKA+ELSvLCdae+a++ifss+gkl+ yss Glyma.10G240900.1.p 9 ERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALVIFSSRGKLFQYSS 59 69***********************************************96 PP | |||||||
2 | K-box | 65.4 | 2e-22 | 80 | 171 | 7 | 97 |
K-box 7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 + +e++ ++ l+qel L+ + e+Lqr+qR+llGe+Le+Ls+keL++Le+qL++ l + R++ ++ l++ i+el k ++l+++nk L+ Glyma.10G240900.1.p 80 GDvAEHQSEQCLYQELLVLRVKHESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLAQARKHLTQKLVSRIDELHGKVHSLEQANKHLE 169 3347788899*******************************************************************************9 PP K-box 96 kk 97 ++ Glyma.10G240900.1.p 170 SQ 171 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.5E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.216 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.77E-40 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-31 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.1E-19 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.497 | 88 | 182 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGRGKVVLER IQNKINRQVT FSKRRNGLLK KAFELSVLCD AEIALVIFSS RGKLFQYSST 60 DINRIIEKYR QCCFNMSQTG DVAEHQSEQC LYQELLVLRV KHESLQRTQR NLLGEELEPL 120 SMKELHSLEK QLDRTLAQAR KHLTQKLVSR IDELHGKVHS LEQANKHLES QERGKCTQIC 180 EGSPNGHILQ DKQVNQFEYG TAGSFRLQQE QTTASKGKEI ETIEDWLRPK QS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-25 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 7e-25 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 7e-25 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 7e-25 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 6e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 6e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 6e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 6e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 7e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 7e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 7e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 7e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28803 | 0.0 | meristem| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the floral meristem, lodicule, palea, lemma, receptacle, empty glume, stamen, pistil, and ovule. {ECO:0000269|PubMed:19820190}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G240900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098753 | 0.0 | BT098753.1 Soybean clone JCVI-FLGm-12N24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003536491.1 | 1e-170 | MADS-box transcription factor 17 isoform X1 | ||||
Swissprot | Q7XUN2 | 3e-61 | MAD17_ORYSJ; MADS-box transcription factor 17 | ||||
TrEMBL | I1LDW9 | 1e-169 | I1LDW9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G38580.1 | 1e-170 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13223 | 17 | 30 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 7e-56 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G240900.1.p |
Entrez Gene | 100802197 |
Publications ? help Back to Top | |||
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