PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G240500.1.p
Common NameGLYMA_10G240500, LOC100800580
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24643.9 Da    PI: 8.5994
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G240500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.11.3e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+ie+++ rqvtfskRr g+lKKA+ELSvLCdaevavi+fs++g+lye+ss
  Glyma.10G240500.1.p  9 KKIEDTTSRQVTFSKRRSGLLKKAYELSVLCDAEVAVIVFSQNGRLYEFSS 59
                         68***********************************************96 PP
2K-box69.41.1e-23841711299
                K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                             ++l+ ++a L k+ie L++++R llG++++s+s+ eL+ +e+qL+ sl+++R++K++l++eqi++l+ +e +l +en +L+++++
  Glyma.10G240500.1.p  84 DYIQQLKLDSASLAKKIELLEHSKRELLGQSVSSCSYDELKGIEEQLQISLQRVRQRKTQLYTEQIDQLRSQESNLLKENAKLSAMWQ 171
                          567899999**************************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.875161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-39160IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-30323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-32374IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002657.54E-41375No hitNo description
PfamPF003192.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.63686176IPR002487Transcription factor, K-box
PfamPF014867.0E-2387169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVRGKVQLKK IEDTTSRQVT FSKRRSGLLK KAYELSVLCD AEVAVIVFSQ NGRLYEFSSS  60
DMTKILERYR EHTKDVPASK FGDDYIQQLK LDSASLAKKI ELLEHSKREL LGQSVSSCSY  120
DELKGIEEQL QISLQRVRQR KTQLYTEQID QLRSQESNLL KENAKLSAMW QRAEKSSQQQ  180
WPRHTQAEAE PHCSSSQSLD VDTELFIGLP KQQC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-23173173MEF2C
5f28_B8e-23173173MEF2C
5f28_C8e-23173173MEF2C
5f28_D8e-23173173MEF2C
6byy_A7e-23190189MEF2 CHIMERA
6byy_B7e-23190189MEF2 CHIMERA
6byy_C7e-23190189MEF2 CHIMERA
6byy_D7e-23190189MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.271050.0root| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
UniprotTISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G240500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536488.11e-155MADS-box protein AGL42
RefseqXP_028184068.11e-155MADS-box protein AGL42-like
SwissprotQ9FIS16e-72AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A445ISC11e-154A0A445ISC1_GLYSO; MADS-box protein AGL42 isoform A (Fragment)
TrEMBLK7LL551e-154K7LL55_SOYBN; Uncharacterized protein
STRINGGLYMA10G38541.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-74AGAMOUS-like 42