PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G240200.1.p
Common NameGLYMA_10G240200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 312aa    MW: 32962.9 Da    PI: 6.8041
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G240200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.25.9e-38621672106
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssas 83 
                          a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++++a ++         ++s+  +  
  Glyma.10G240200.1.p  62 AAAKRSSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTIPAIAVsvggtlkiPTSSEARA-- 149
                          789*************************************************************999995554333322211111111.. PP

                  TCP  84 nsssgkaaksaakskksqksaas 106
                               + +++++k++++++ +++
  Glyma.10G240200.1.p 150 -----QGEEDTPKKRRRRALKSE 167
                          .....112222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-3067148IPR005333Transcription factor, TCP
PROSITE profilePS5136927.51268122IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEVNPTHDGG DDTSETPLPP MVDPSPSPSP QMKEEVMDAE QGGDVSLPMS VVPASLTVST  60
EAAAKRSSKD RHTKVEGRGR RIRMPATCAA RIFQLTRELG HKSDGETIRW LLEHAEPAII  120
EATGTGTIPA IAVSVGGTLK IPTSSEARAQ GEEDTPKKRR RRALKSEFIN LNENQVSVSS  180
GLAPIAQSSA YGSGGGGLVP LWHGNGAAAG PFFVFPNASN PPQYWAIPAT AAPFFNVQAR  240
PISGFVSALQ MQHDNHHHSL INAAASGSVK SSSTVSVTSS AASTQMLKDF SFEIYDKKEL  300
QFLGQPPQPS S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161KKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G240200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028183279.10.0transcription factor TCP19-like
RefseqXP_028183280.10.0transcription factor TCP19-like
RefseqXP_028183281.10.0transcription factor TCP19-like
SwissprotQ9LT891e-74TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A0R0HY550.0A0A0R0HY55_SOYBN; Uncharacterized protein
STRINGGLYMA10G38510.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.24e-70TCP family protein