PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G239400.1.p
Common NameGLYMA_10G239400, LOC100797582
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 206aa    MW: 22566.2 Da    PI: 6.9385
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G239400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-1955105155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+++l+g
  Glyma.10G239400.1.p  55 PVYRGVRRRD-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAALALRG 105
                          68*****999.7******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1455105IPR001471AP2/ERF domain
SMARTSM003805.5E-3256119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3256115IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2156115IPR016177DNA-binding domain
PROSITE profilePS5103223.0956113IPR001471AP2/ERF domain
PRINTSPR003673.4E-95768IPR001471AP2/ERF domain
CDDcd000187.80E-3057115No hitNo description
PRINTSPR003673.4E-97995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MFSINHFSAP DANSPGSGSG TSRPVPALSD EDYFLAASNP KKRAGRKKFR ETRHPVYRGV  60
RRRDSGKWVC EVREPNKKSR IWLGTFPTAE MAARAHDVAA LALRGRSACL NFADSASRLP  120
VPATAEARDI QKAAAEAAEA FRPGKDDGAV VATATEREEE EEKVVPEYLR NMVLMSPTHC  180
FGSDEYGSAD VEFDDAEVRL WSYSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-15541121271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G239400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3653770.0EU365377.1 Glycine max cultivar Stout CRT binding factor 2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536483.11e-150dehydration-responsive element-binding protein 1E
RefseqXP_028183945.11e-150dehydration-responsive element-binding protein 1E-like
SwissprotQ9FJ931e-58DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A445IRZ91e-148A0A445IRZ9_GLYSO; Dehydration-responsive element-binding protein 1D
TrEMBLB3TPN41e-148B3TPN4_SOYBN; CRT binding factor 2
STRINGGLYMA10G38440.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-45C-repeat-binding factor 4
Publications ? help Back to Top
  1. Pennycooke JC, et al.
    The low temperature-responsive, Solanum CBF1 genes maintain high identity in their upstream regions in a genomic environment undergoing gene duplications, deletions, and rearrangements.
    Plant Mol. Biol., 2008. 67(5): p. 483-97
    [PMID:18415686]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  4. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  5. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  6. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]