PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G239300.1.p
Common NameGLYMA_10G239300, LOC100813560
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 206aa    MW: 21991.2 Da    PI: 4.2848
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G239300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.2e-154592355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+G r ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++l+g
  Glyma.10G239300.1.p 45 YRGTR-CR-SGKWVSEIREPRK---TNRIWLGTYPTAEMAAAAYDVAALALKG 92
                         66665.55.6*********854...49***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.78E-1444102No hitNo description
SMARTSM003801.0E-2544106IPR001471AP2/ERF domain
PROSITE profilePS5103219.66444100IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-1745102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-2545101IPR001471AP2/ERF domain
PfamPF008471.4E-84992IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDGNSFGNVP PPPIQVPDNL AISSSSSPTP TTSSPSPTPS GGFRYRGTRC RSGKWVSEIR  60
EPRKTNRIWL GTYPTAEMAA AAYDVAALAL KGPDTPVNFP NSILSYPIPA SLSSTDIRAA  120
AAAAAQARIV RAPQESEETV NPDDGGQGLS ERREEYIDED ELLNMPNLLD EMARGMQVSP  180
LRITSYSSDD SPGNSDGDNL WSYTL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G239300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535627.11e-147ethylene-responsive transcription factor ERF027
RefseqXP_028183927.11e-147ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ902e-43ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A445IRX91e-145A0A445IRX9_GLYSO; Ethylene-responsive transcription factor ERF025
TrEMBLI1LDV31e-145I1LDV3_SOYBN; Uncharacterized protein
STRINGGLYMA10G38420.11e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-29ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]