PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G236400.1.p | ||||||||
Common Name | GLYMA_10G236400, LOC100807142 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 34780.2 Da PI: 7.754 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61 | 2.6e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd+ lvd+++++G g+W++ +++ g+ R++k+c++rw +yl Glyma.10G236400.1.p 14 RGAWTPEEDQSLVDYIHKHGHGSWRSLPKHAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.4e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+ +v+++ +lG++ W++Ia+ ++ gRt++++k++w+++l Glyma.10G236400.1.p 67 RGPFTSEEESTIVQLHGMLGNR-WASIASQLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.496 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-18 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.32E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.76 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.69E-11 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MGKAPCCEKH GVRRGAWTPE EDQSLVDYIH KHGHGSWRSL PKHAGLLRCG KSCRLRWINY 60 LRPGIKRGPF TSEEESTIVQ LHGMLGNRWA SIASQLPGRT DNEIKNYWNT HLKKRLLRSC 120 YSQRAKQLCV IPDPTIVKSE SPSTRHMVQW ESVRVEAEAR LSMESTMLNS WPTSKTCPDH 180 FLQLWNSEVG KSFRMIKGKE EGVVSQSLVS QPSSSSKLES CSDVSLQVKN NTGNSSCIPK 240 LEDVSMVHEQ TSSYKPKLDD DTAGSDSGNY EFLDTSDSTL KHLLHMPDSD MGFLGQNDHF 300 QNLLDGTCD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 14 | 116 | 7 | 108 | B-MYB |
1h8a_C | 4e-28 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37687 | 0.0 | seed coat |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G236400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235230 | 0.0 | AC235230.1 Glycine max strain Williams 82 clone GM_WBb0026I18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535618.1 | 0.0 | transcription factor MYB41 | ||||
Refseq | XP_006589547.1 | 0.0 | transcription factor MYB41 | ||||
Refseq | XP_028182468.1 | 0.0 | transcription factor MYB41-like | ||||
Swissprot | Q9M2D9 | 2e-91 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A0B2QK18 | 0.0 | A0A0B2QK18_GLYSO; Myb-related protein Myb4 | ||||
TrEMBL | K7LL35 | 0.0 | K7LL35_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G38090.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2331 | 32 | 80 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 2e-89 | myb domain protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G236400.1.p |
Entrez Gene | 100807142 |