PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.10G234100.1.p

Common Name

GLYMA_10G234100, LOC100786118

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 992aa MW: 109784 Da PI: 5.568

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G234100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.5	1.3e-28	585	635	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Glyma.10G234100.1.p 585 EKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 635 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	574	655	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-25	588	635	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.83E-24	892	981	No hit	No description
PROSITE profile	PS51745	25.474	896	978	IPR000270	PB1 domain
SMART	SM00666	5.5E-27	896	978	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.7E-27	896	977	No hit	No description
Pfam	PF00564	5.4E-19	896	977	IPR000270	PB1 domain
CDD	cd06407	2.21E-38	897	977	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MSEPEEENNQ DYVPRSKPAE EGGGGCTTMD FDLDLETSWP LDHMAFGSNP MSPFLFSTSS 60 DQPYSPLWAF SDGEDPKLPA SAFSDCHKIF SCDSNSIAEK PVENDDNKKN LPPLVPMPPV 120 ENLDGYCVIK ERMTQALRYF KELTELNVLA QVWAPVRNGN RYVLTTSGQP FVLDPHSNGL 180 HQYRTVSLMY MFSVDGENDG SLGLPGRVFQ QKLPEWTPNV QYYSSKEYPR RDHAQHYNVR 240 GTLALPVFEP SIQSCVGVLE LIMTSPKINY APEVDKICKA LETVNLRSSE ILDHPYTQIC 300 NEGRQNALSE ILEILTVVCE TLNLPLAQTW IPCKHRSVLA QGGGVKKSCS SFDGSCMGKV 360 CMSTTDIAFY IIDAHLWGFR EACVEHHLQQ GQGVAGRAFL SHSMCFCSNI TQFCKTDYPL 420 VHYALMFGLT SCFTICLRSS HTGNDDYVLE FFLPPRITDF HEQKTLLGSI LAIMKQHFQS 480 LKIASGVELE DGSIEIIEAT IERVHTRHES IPITPSIKSP PRLDTSPNMG EEVPQDPSEQ 540 QILMYCNDMN DGRSLGKNAD GIDHMPSIET KNIKKPLERK RGKTEKSISL EVLQRYFAGS 600 LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKVNRSLS KLKRVIESVQ GAEGAFGLNS 660 LSKSPLPIAV GSFPEPSTPN KFSQSASLSI KPSEPQVKEN ELNASKALEA NRQAGMEDQL 720 LGGRTQNLEK VINDKGGYTR EVGREPKRTR TRNGSSEDST NPTSHGSCHD SPPNESSPVK 780 DIFITSNNDQ CAGIKRSPES TLQPTINTPS RPTAYPMPDF VAVELQEPFG GMLIEDAGSS 840 KDLRNLCPLV AEVILEDMIP EACGTNLPGP DLSPKLSMGT PNKAVTPFAA MKEMKTVTIK 900 ATYREDIIRF RVSLTCGIVE LKEEIAKRLK LEVGTFDIKY LDDDHEWVLI ACDADLQECM 960 DVSRSSGSNI IRVLVHDITS NLGSSCESSG E*

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MSEPEEENNQ DYVPRSKPAE EGGGGCTTMD FDLDLETSWP LDHMAFGSNP MSPFLFSTSS  60
DQPYSPLWAF SDGEDPKLPA SAFSDCHKIF SCDSNSIAEK PVENDDNKKN LPPLVPMPPV  120
ENLDGYCVIK ERMTQALRYF KELTELNVLA QVWAPVRNGN RYVLTTSGQP FVLDPHSNGL  180
HQYRTVSLMY MFSVDGENDG SLGLPGRVFQ QKLPEWTPNV QYYSSKEYPR RDHAQHYNVR  240
GTLALPVFEP SIQSCVGVLE LIMTSPKINY APEVDKICKA LETVNLRSSE ILDHPYTQIC  300
NEGRQNALSE ILEILTVVCE TLNLPLAQTW IPCKHRSVLA QGGGVKKSCS SFDGSCMGKV  360
CMSTTDIAFY IIDAHLWGFR EACVEHHLQQ GQGVAGRAFL SHSMCFCSNI TQFCKTDYPL  420
VHYALMFGLT SCFTICLRSS HTGNDDYVLE FFLPPRITDF HEQKTLLGSI LAIMKQHFQS  480
LKIASGVELE DGSIEIIEAT IERVHTRHES IPITPSIKSP PRLDTSPNMG EEVPQDPSEQ  540
QILMYCNDMN DGRSLGKNAD GIDHMPSIET KNIKKPLERK RGKTEKSISL EVLQRYFAGS  600
LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKVNRSLS KLKRVIESVQ GAEGAFGLNS  660
LSKSPLPIAV GSFPEPSTPN KFSQSASLSI KPSEPQVKEN ELNASKALEA NRQAGMEDQL  720
LGGRTQNLEK VINDKGGYTR EVGREPKRTR TRNGSSEDST NPTSHGSCHD SPPNESSPVK  780
DIFITSNNDQ CAGIKRSPES TLQPTINTPS RPTAYPMPDF VAVELQEPFG GMLIEDAGSS  840
KDLRNLCPLV AEVILEDMIP EACGTNLPGP DLSPKLSMGT PNKAVTPFAA MKEMKTVTIK  900
ATYREDIIRF RVSLTCGIVE LKEEIAKRLK LEVGTFDIKY LDDDHEWVLI ACDADLQECM  960
DVSRSSGSNI IRVLVHDITS NLGSSCESSG E*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.39037	0.0	somatic embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G234100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003536463.2	0.0	protein NLP6
Refseq	XP_028182839.1	0.0	protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A0B2QQ21	0.0	A0A0B2QQ21_GLYSO; Protein NLP7
TrEMBL	K7LL19	0.0	K7LL19_SOYBN; Uncharacterized protein
STRING	GLYMA10G37860.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Glyma.10G234100.1.p
Entrez Gene	100786118

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]