PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G232000.1.p
Common NameGLYMA_10G232000, LOC100797571
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 591aa    MW: 65220.9 Da    PI: 8.1293
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G232000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.73.7e-922335892373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++ L+e+A+a+s+g++ +a+++L+rls +      + qR + +++ AL++r+++    +    p  + +e   +e++ +++l++e s ++
  Glyma.10G232000.1.p 233 KQSLTEAATAISEGKFDAATEILTRLSLN------SDQRFVNCMVSALKSRMNH----VE-YPP--PVAELFGTEHAESTQLLFEYSLFF 309
                          689***********************986......569***************9....32.222..22223499**************** PP

                 GRAS  92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                          k++ ++aN aIle++ +e  ++ ++Dfdi    Q+++Ll++L++R++g+p  ++i +v + +  + e+l+ +g  L + Ae+lg+ fef+
  Glyma.10G232000.1.p 310 KVARMVANIAILESALTEsGKLCVVDFDICDENQYVSLLHELSARRKGAPaAVKIVVVTE-NCADDERLNIVGVLLGRHAEKLGIGFEFK 398
                          *************8777669***********************999776669****9999.6679************************* PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          v +++r+++l+ e+L ++ +E laVn++++l+r++desvs+e++rd++L+ vk+l P+vv++veq+a+ n+++F++r++e + yy alfd
  Glyma.10G232000.1.p 399 V-LTRRIAELTRESLGCDADEPLAVNFAYKLYRMPDESVSTENPRDKLLRRVKTLAPRVVTLVEQDANANTAPFVARVTELCAYYGALFD 487
                          *.699************************************************************************************* PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          sle++++re+ +r+ +E+  l+r++vn vaceg++r+er+e ++kWr+r+++aGF+  pls+++a+++k+ l   +++   v+ e+g ++
  Glyma.10G232000.1.p 488 SLESTMARENLKRVRIEEG-LSRKVVNSVACEGRDRVERCEVFGKWRARMSMAGFRLKPLSQRVADSIKARLGGAGNR-VAVKVENGGIC 575
                          *******************.********************************************************77.9********** PP

                 GRAS 360 lgWkdrpLvsvSaW 373
                          +gW++r+L+++SaW
  Glyma.10G232000.1.p 576 FGWMGRTLTVASAW 589
                          ************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.542206571IPR005202Transcription factor GRAS
PfamPF035141.3E-89233589IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MSSPRFPGGG ASDFYGGAGG FPSQSTALQP TMNNHSATTH HPLYRSQPSI FLNPSSHIAQ  60
HQTPTLIGKR TLAEFQTHNH SLNLINNNDN LLLSNHQLRS VKPRTFQHTE LSTFPSRRYG  120
LPLLHHLRPN AVNAQQQPVT NSILANTNYL SPVHSRLTAT HEPEKNLIAL RLQELEKQLL  180
EDNEDDAVSV ITTTTSEWSH TIQNLITPQK PASSSPTSST TSSNTSVESS SYKQSLTEAA  240
TAISEGKFDA ATEILTRLSL NSDQRFVNCM VSALKSRMNH VEYPPPVAEL FGTEHAESTQ  300
LLFEYSLFFK VARMVANIAI LESALTESGK LCVVDFDICD ENQYVSLLHE LSARRKGAPA  360
AVKIVVVTEN CADDERLNIV GVLLGRHAEK LGIGFEFKVL TRRIAELTRE SLGCDADEPL  420
AVNFAYKLYR MPDESVSTEN PRDKLLRRVK TLAPRVVTLV EQDANANTAP FVARVTELCA  480
YYGALFDSLE STMARENLKR VRIEEGLSRK VVNSVACEGR DRVERCEVFG KWRARMSMAG  540
FRLKPLSQRV ADSIKARLGG AGNRVAVKVE NGGICFGWMG RTLTVASAWC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-322295891374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.202750.0flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G232000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535602.10.0scarecrow-like protein 8
RefseqXP_028185141.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-143SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A445IRH90.0A0A445IRH9_GLYSO; Scarecrow-like protein 8
TrEMBLI1LDM90.0I1LDM9_SOYBN; Uncharacterized protein
STRINGGLYMA10G37640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Representative plantOGRP7599918
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-141SCARECROW-like 8