PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G230200.1.p
Common NameGLYMA_10G230200, LOC100127366
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 298aa    MW: 33388 Da    PI: 8.949
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G230200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30180238259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+++p+++++tY+g+H h+
  Glyma.10G230200.1.p 180 ADLWAWRKYGQKPIKGSPYPRNYYRCSSSkGCMARKQVERSNTEPDMFVVTYTGDHSHP 238
                          699************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-30165240IPR003657WRKY domain
PROSITE profilePS5081132.524174240IPR003657WRKY domain
SuperFamilySSF1182902.75E-26174240IPR003657WRKY domain
SMARTSM007746.9E-37179239IPR003657WRKY domain
PfamPF031061.0E-25181238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAEDWDLFAI VRSCQSATTT IPQTTTNNTS SSLVTSTIKE EIYDAFSSPN IVPPNTNEFQ  60
ELHQLFTPFN PTNNTSAPGI NPNSPYFAEQ ESQQISEHLH IWPHFVPEQS STPSFNRFHD  120
QQQQQQINQL QALQKHEFRL PQNISPTVSP NAQPQTPKSR KRKSQQKKMV CHVTADNLSA  180
DLWAWRKYGQ KPIKGSPYPR NYYRCSSSKG CMARKQVERS NTEPDMFVVT YTGDHSHPRP  240
THRNSLAGST RSKTLVTNPP PSPGSLSCFQ ATPFSSSSSS PPHSPTSPEE DPRKPPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-21163241280Disease resistance protein RRS1
5w3x_D4e-21163241280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G230200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195530.0EU019553.1 Glycine max WRKY2 (WRKY2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535592.10.0probable WRKY transcription factor 27
RefseqXP_028183866.10.0probable WRKY transcription factor 27
TrEMBLA0A445IRF60.0A0A445IRF6_GLYSO; Putative WRKY transcription factor 27 isoform A
TrEMBLI1LDL10.0I1LDL1_SOYBN; Uncharacterized protein
STRINGGLYMA10G37460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-52WRKY DNA-binding protein 27