PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G219000.1.p
Common NameGLYMA_10G219000, LOC100816937
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 158aa    MW: 17542 Da    PI: 8.039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G219000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.9e-163678349
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                         y GVr ++ +gr++AeIr p++   + r++lg+f+taeeAa a++  
  Glyma.10G219000.1.p 36 YLGVRKRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAIAYDLS 78
                         77******.**********865...5******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-283598IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-203593IPR016177DNA-binding domain
PROSITE profilePS5103220.1523592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-263592IPR001471AP2/ERF domain
CDDcd000181.51E-283691No hitNo description
PRINTSPR003676.4E-93647IPR001471AP2/ERF domain
PfamPF008476.1E-93777IPR001471AP2/ERF domain
PRINTSPR003676.4E-95874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSQTTAQVSK TKPMENLSPL IYKNPIRRTS RRSTMYLGVR KRPWGRYAAE IRNPYTKERH  60
WLGTFDTAEE AAIAYDLSSI KICGINARTN FHYPFVSLPP LPMSSLPPPP PPPTPELDPS  120
VEVCLEMMNA ASYDGDDESL VIASILQSFS NSGNCSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-153291262ATERF1
3gcc_A2e-153291262ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G219000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0118100.0AP011810.1 Glycine max DNA, BAC clone: MiB039C03, complete sequence.
GenBankAP0118130.0AP011813.1 Glycine max DNA, BAC clone: MiB319A04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025980041.11e-114ethylene-responsive transcription factor LEP
RefseqXP_028184202.11e-114ethylene-responsive transcription factor LEP-like
TrEMBLA0A445IR371e-113A0A445IR37_GLYSO; Ethylene-responsive transcription factor ERF088
TrEMBLK7LKS61e-113K7LKS6_SOYBN; Uncharacterized protein
STRINGGLYMA10G36300.21e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145131317
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.14e-29ERF family protein