PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G213500.1.p | ||||||||
Common Name | GLYMA_10G213500, LOC100779519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 24111.7 Da PI: 6.4861 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137 | 6.7e-43 | 69 | 168 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++reda+ss+vyeA+ar+rdPvyG++g i +lq+q+++l Glyma.10G213500.1.p 69 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQREDAVSSMVYEANARIRDPVYGCAGAICQLQKQVSEL 158 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +a+la++++e Glyma.10G213500.1.p 159 QAQLAKAQAE 168 *****99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.219 | 68 | 169 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-43 | 69 | 166 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEYKVKTTTS TPSPPIPIHV PTMLSNSPPS SSSSPPSQSP TPFPSPSLGS PSAAPPSPPP 60 PLPPVVVSPC AACKILRRRC VEKCVLAPYF PPTDPLKFTI AHRVFGASNI IKFLQELPES 120 QREDAVSSMV YEANARIRDP VYGCAGAICQ LQKQVSELQA QLAKAQAEVV NMQCQQANLV 180 ALICMEMSQS QEQHVLQPQT HVDMSCFIED NSFGTAWEPL WT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-44 | 61 | 176 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-44 | 61 | 176 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.25596 | 0.0 | flower| hypocotyl| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G213500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099113 | 0.0 | BT099113.1 Soybean clone JCVI-FLGm-13B15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003536369.1 | 1e-160 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 2e-77 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | I1LD38 | 1e-159 | I1LD38_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G35760.1 | 1e-160 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-67 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G213500.1.p |
Entrez Gene | 100779519 |