PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G210600.1.p
Common NameGLYMA_10G210600, LOC100803053
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 613aa    MW: 67127.7 Da    PI: 7.4835
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G210600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23123224199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF 
  Glyma.10G210600.1.p 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFL 210
                          89****************************986445444..8************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++ l+v+++r+
  Glyma.10G210600.1.p 211 --RAENGDLCVGIRRA 224
                          ..4488999****997 PP
2Auxin_resp1132.9e-37282364283
           Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          ++ a ++ +FevvY+Pras++eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  Glyma.10G210600.1.p 282 VTCAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 364
                          6678899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-38115226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-30116224IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-22122223No hitNo description
PROSITE profilePS5086313.253123225IPR003340B3 DNA binding domain
SMARTSM010191.8E-20123225IPR003340B3 DNA binding domain
PfamPF023621.4E-21123224IPR003340B3 DNA binding domain
PfamPF065078.1E-33282364IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MFMVMDSAER CLDSQLWHAC AGAMVQMPPL NTKVFYFPQG HAEHAHGKVE YFGKNHQTRV  60
PPLIPCRLSA MKYMADPDTD EVYVKMRLTP LREHELLDSQ DDCFLGNTNS GGVENQEKPP  120
TSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTIIAKDMHG QCWKFRHIYR  180
GTPRRHLLTT GWSNFVNQKR LVAGDSIVFL RAENGDLCVG IRRAKKGIGG GTEFSSGWNN  240
PLFGGGGGFL CGSESSFVSG AKSGGDHEIV GRVAPESVVE AVTCAVNGRP FEVVYYPRAS  300
SPEFCVKASV VKAAMQIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVA DPIRWPDSPW  360
RLLQVVWDEP DLLQNVKCVN PWLVELVSNM PTFNLSAYSP PRKKQRFLQD PYFQVINQLP  420
MPSFSSNLLN YTNSLCTIQD SNSSGGIQGA RHAQFGLSPS DFPFNKLPAD MLLGGFSRLD  480
HAAAQPIRPP CGTYKNNTTT KANVGISCLL TVGNPGQNFK ESNETKAPHI LLFGKLIQTE  540
QKSSNTSSAN TNGNSVSEGN SHKTSNASDG VGSGLHQGSP IENNSDGGSP WYKDQHKSDL  600
GTDNVNTLCI AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-781238551388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G210600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535530.20.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLK7LKL90.0K7LKL9_SOYBN; Auxin response factor
STRINGGLYMA10G35481.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]