PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G206500.1.p
Common NameGLYMA_10G206500, LOC100794570
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 274aa    MW: 31813 Da    PI: 7.7886
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G206500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.8e-161562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd++l + v+ +G + W+  +++ g++R++k+c++rw++yl
  Glyma.10G206500.1.p 15 RGPWSAEEDKILMNDVQVHGERKWRELSKRAGLKRCGKSCRLRWLNYL 62
                         89********************************************97 PP
2Myb_DNA-binding52.71e-1668113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl
  Glyma.10G206500.1.p  68 RGNISSDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 113
                          78999*****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.9181062IPR017930Myb domain
SuperFamilySSF466891.21E-2813109IPR009057Homeodomain-like
SMARTSM007176.9E-121464IPR001005SANT/Myb domain
PfamPF002491.7E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-221669IPR009057Homeodomain-like
CDDcd001675.72E-91762No hitNo description
PROSITE profilePS5129425.61763117IPR017930Myb domain
SMARTSM007175.4E-1667115IPR001005SANT/Myb domain
PfamPF002494.8E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2470116IPR009057Homeodomain-like
CDDcd001671.27E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRKANCDNQ YAMNRGPWSA EEDKILMNDV QVHGERKWRE LSKRAGLKRC GKSCRLRWLN  60
YLKPDIKRGN ISSDEEDLII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN TYLRKKTEHK  120
DKHNKILSHN NNIPIKLRIE SPQCSKNSSG NVLDPAKSPH PMRCTKVMMP VNDSVNTMNL  180
IATSWENHNP SASMPLDDHN HCLTGVLQDL DISDLLMSYE DDCRFNGYAC VEIPQHIFKD  240
ETWRLDDSMG EEAWYENWKI DTYFPQDMGF SSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G206500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150418e-65AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535515.10.0transcription factor TT2
RefseqXP_028184166.10.0transcription factor TT2-like
TrEMBLA0A445IQ750.0A0A445IQ75_GLYSO; Transcription repressor MYB5
TrEMBLK7LKK00.0K7LKK0_SOYBN; Uncharacterized protein
STRINGGLYMA10G35061.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15511512
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-56myb domain protein 5