PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.10G204200.1.p

Common Name

GLYMA_10G204200, Glyma10g34780.1, LOC100796683

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 384aa MW: 42238.9 Da PI: 6.7635

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G204200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3e-32	210	265	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+++LH+rF++a++qLGG++ AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ Glyma.10G204200.1.p 210 KQRRCWSQDLHKRFLHALQQLGGADTATPKQIREIMNVDGLTNDEVKSHLQKYRLH 265 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.369	207	267	IPR017930	Myb domain
SuperFamily	SSF46689	7.62E-18	208	268	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.0E-29	208	268	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-27	210	265	IPR006447	Myb domain, plants
Pfam	PF00249	7.0E-7	212	263	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MYFFTEKMHS LKMGFPDYIQ TLEEERRKIQ VFSKELPLSL ELVTQAIEAC KQQLSGTASE 60 YNLNGHSECS EQTTSTEGPV LEEFIPIKKM ASSSPFCDEE DEDDEQHSHK QRVSKENNNS 120 DKRKSDWLRS VQLWNPDPPA EEDVNKKVPG LELKRSGNGG GAFQPFHKEE RGAKTSESLS 180 KAPSSTSVAA ASSSAAEPAA EKSLNEGHRK QRRCWSQDLH KRFLHALQQL GGADTATPKQ 240 IREIMNVDGL TNDEVKSHLQ KYRLHTRRPS PMVHNSSNPQ AAPFVLVGNI FVQSPEYAAV 300 ATSTASREVA TVAAPAGIYA PVATHPIPVS HPPADSIKNP QFKKVQLFEH SISDERANHS 360 EGAVHSNSPT SSSSTHTSTS LGY*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MYFFTEKMHS LKMGFPDYIQ TLEEERRKIQ VFSKELPLSL ELVTQAIEAC KQQLSGTASE  60
YNLNGHSECS EQTTSTEGPV LEEFIPIKKM ASSSPFCDEE DEDDEQHSHK QRVSKENNNS  120
DKRKSDWLRS VQLWNPDPPA EEDVNKKVPG LELKRSGNGG GAFQPFHKEE RGAKTSESLS  180
KAPSSTSVAA ASSSAAEPAA EKSLNEGHRK QRRCWSQDLH KRFLHALQQL GGADTATPKQ  240
IREIMNVDGL TNDEVKSHLQ KYRLHTRRPS PMVHNSSNPQ AAPFVLVGNI FVQSPEYAAV  300
ATSTASREVA TVAAPAGIYA PVATHPIPVS HPPADSIKNP QFKKVQLFEH SISDERANHS  360
EGAVHSNSPT SSSSTHTSTS LGY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.22384	0.0	leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G204200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031196	0.0	KT031196.1 Glycine max clone HN_CCL_161 MYB/HD-like transcription factor (Glyma10g34780.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003536313.1	0.0	transcription factor HHO3
Swissprot	Q9FPE8	7e-90	HHO3_ARATH; Transcription factor HHO3
TrEMBL	I1LCS9	0.0	I1LCS9_SOYBN; MYB/HD-like transcription factor
STRING	GLYMA10G34780.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3918	33	63
Representative plant	OGRP5415	12	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	2e-84	G2-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.10G204200.1.p
Entrez Gene	100796683

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]