PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G197500.1.p
Common NameGLYMA_10G197500, LOC100782028
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 466aa    MW: 52044.4 Da    PI: 7.3107
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G197500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.33e-53331601128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv +yLk+kv+gk++++ ++i+evdiy++ePwdL   +++k++++ewyfFs  dkky +g r nrat++gyWkatg+
  Glyma.10G197500.1.p  33 LAPGFRFHPTDEELVIYYLKRKVSGKSFRF-DAISEVDIYRSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGN 121
                          579**************************9.99**************75348899999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v + ++++vglkktLvf++grap+g++t+Wvmheyrl
  Glyma.10G197500.1.p 122 DRPVRH-DQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 160
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-6029188IPR003441NAC domain
PROSITE profilePS5100558.39633187IPR003441NAC domain
PfamPF023651.6E-2735160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MGRETMCLPT PPTTATTTVN PVPPPAPAPP TSLAPGFRFH PTDEELVIYY LKRKVSGKSF  60
RFDAISEVDI YRSEPWDLAD KSRLKTRDQE WYFFSALDKK YGNGGRMNRA TSKGYWKATG  120
NDRPVRHDQR TVGLKKTLVF HSGRAPDGKR TNWVMHEYRL VEEELERAGS GSSQPQDAYV  180
LCRVFHKNNI GPPNGQRYAP FIEEEWDDAS GMVPGADPGD NRSFAHQPHV EGKSGVLCAE  240
GRNGALQDTQ SFNKAPFDVN KLPIETQNLL AVCKRESMAE YPSPEKDDNN CKHMDDYPSP  300
QTDNPKPFSQ IYKRRRHNLN SNNSHVSGDS IRTSQDPCSS TITTAATALP TTNAAAGTAT  360
NTAPKKHFLS ALVEFSLLES LESKDSLASI KTPDFDVENL ESSMPPSCAK FIKEMKSEMQ  420
KLSVEKETMR FEMMSTQAMI NILQSRVDVL SKENEDLKRM VAQNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-492718914170NAC domain-containing protein 19
3swm_B5e-492718914170NAC domain-containing protein 19
3swm_C5e-492718914170NAC domain-containing protein 19
3swm_D5e-492718914170NAC domain-containing protein 19
3swp_A5e-492718914170NAC domain-containing protein 19
3swp_B5e-492718914170NAC domain-containing protein 19
3swp_C5e-492718914170NAC domain-containing protein 19
3swp_D5e-492718914170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.73810.0cotyledon| hypocotyl| leaf| meristem| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G197500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536286.10.0NAC domain containing protein 50
RefseqXP_028185342.10.0NAC domain containing protein 50-like
SwissprotQ9SQY01e-127NAC52_ARATH; NAC domain containing protein 52
TrEMBLA0A445IPU70.0A0A445IPU7_GLYSO; NAC domain containing protein 52
TrEMBLI1LCM40.0I1LCM4_SOYBN; Uncharacterized protein
STRINGGLYMA10G34130.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Representative plantOGRP1087158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-104NAC domain containing protein 50
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  4. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  5. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]