PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G197200.1.p | ||||||||
Common Name | GLYMA_10G197200, LOC100819786 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 357aa MW: 39759.9 Da PI: 6.9529 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00085 | 151 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Glyma.10G197200.1.p 151 YECKTCNRTFPSFQALGGHRASH 173 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13 | 0.0003 | 232 | 254 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Glyma.10G197200.1.p 232 HECSICGAEFTSGQALGGHMRRH 254 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.97E-9 | 150 | 173 | No hit | No description |
Pfam | PF13912 | 3.3E-13 | 150 | 175 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 151 | 173 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.637 | 151 | 178 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 153 | 173 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.97E-9 | 227 | 254 | No hit | No description |
Pfam | PF13912 | 5.3E-13 | 231 | 256 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.723 | 232 | 254 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 232 | 254 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 234 | 254 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MVSERTNMEA PEELSFGGSK DHTNIAKGKR TKRVRPQSPI PFSITANSST GGEKEEDCYN 60 VDDDNIIKNE DINNNNINNI NSTPTTSAEL QDITDEEEDM ANCLILLAQG QSRESPKHAE 120 EDAGMSYAKH NSRKFLEAAT LGSSRAGYYV YECKTCNRTF PSFQALGGHR ASHKKPKALM 180 AIGQKKKQQH LLSSDEEEFQ LKTNKSPFSI QLNTNGNLYS SSSNNNNKSK VHECSICGAE 240 FTSGQALGGH MRRHRAPVGT TPTATILSFT PLALEPEEDH PRKKRNVLNL DLDLNLPAPE 300 DDHRESKFAF ASKQQQQQHG QKQPQQHHHP EQKQQQPQQQ QTSLVFPVPA LVDCHY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G197200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006589351.2 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | I1LCM0 | 0.0 | I1LCM0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G34100.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 | Representative plant | OGRP2350 | 10 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 2e-59 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G197200.1.p |
Entrez Gene | 100819786 |