PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G196600.1.p | ||||||||
Common Name | GLYMA_10G196600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 388aa MW: 43100.2 Da PI: 8.7214 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.7 | 1.3e-33 | 116 | 170 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl+h+kSHLQkYRl Glyma.10G196600.1.p 116 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRL 170 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.726 | 113 | 173 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-32 | 113 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 116 | 171 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.54E-16 | 116 | 172 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-7 | 118 | 169 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.3E-13 | 214 | 259 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MQKRREESDK IPVKRDSASS LPQPQSLVLF TSPFSPFPFL LPLSFAKWVI ISFSHNTIFF 60 TFSFFFASLR WGFKFHHRNR MFSRLIHPHE GQEDMQGGSN HAHLGDPCLV LTSDPKPRLR 120 WTADLHERFV DAVTQLGGAS KATPKAIMRT MNVKGLTLYH LKSHLQKYRL GKQSGKDSDE 180 GLKDGMSASY LQESPGTDNS SPKLPASDAN EGHEVKEALR AQMEVQSKLH LLVEAEKHLQ 240 IRQDAERRYM GMLERACKML ADQFIGDVII DRDGQKFQGL ENKTSRSPLV DHGGFFPAAC 300 TEVGGMHVSE VPPILQPQGA ECSSESCLKS LESLGGLTLE GSPGGSKKRM LNLDSMVAPL 360 IWSEANTRTQ GIHLAQVNPP GMTRYGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-19 | 116 | 172 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-19 | 116 | 172 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-19 | 116 | 172 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-19 | 116 | 172 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-19 | 116 | 172 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-19 | 116 | 172 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-19 | 116 | 172 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-19 | 116 | 172 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-19 | 116 | 172 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-19 | 116 | 172 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-19 | 116 | 172 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-19 | 116 | 172 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.6093 | 0.0 | hypocotyl| pod| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G196600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095107 | 0.0 | BT095107.1 Soybean clone JCVI-FLGm-19M17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028185945.1 | 0.0 | protein PHR1-LIKE 2-like isoform X1 | ||||
TrEMBL | A0A445IPV7 | 0.0 | A0A445IPV7_GLYSO; Protein PHR1-LIKE 2 isoform A | ||||
TrEMBL | K7LKE6 | 0.0 | K7LKE6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G34050.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6618 | 33 | 49 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 5e-63 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G196600.1.p |