PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G187000.1.p
Common NameGLYMA_10G187000, LOC100794227
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 148aa    MW: 16422 Da    PI: 6.0219
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G187000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-201868255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr+++ +g+++AeIrd +    + +r++lg+f taeeAa+a+++a+  ++g
  Glyma.10G187000.1.p 18 RYRGVRRRP-WGKFAAEIRDSTR---QgQRVWLGTFNTAEEAARAYDRAAYTMRG 68
                         6********.**********322...24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.93E-161877No hitNo description
PROSITE profilePS5103223.6961876IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-321878IPR001471AP2/ERF domain
PfamPF008472.4E-151868IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-241878IPR016177DNA-binding domain
SMARTSM003803.8E-331881IPR001471AP2/ERF domain
PRINTSPR003671.4E-111930IPR001471AP2/ERF domain
PRINTSPR003671.4E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDEEGSRGRA KEDAGDVRYR GVRRRPWGKF AAEIRDSTRQ GQRVWLGTFN TAEEAARAYD  60
RAAYTMRGPF AILNFPDEYP VTAAGATNAA TYSSASSSSS LASSSRHADV EARGRSEQGR  120
EVFEFEYLDD KLLEELLDCE NKKKRGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-3531462128Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G187000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535439.11e-104ethylene-responsive transcription factor ERF096
RefseqXP_028182486.11e-104ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC52e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A445IPI01e-102A0A445IPI0_GLYSO; Ethylene-responsive transcription factor ERF098
TrEMBLI1LCB91e-102I1LCB9_SOYBN; Uncharacterized protein
STRINGGLYMA10G33080.11e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-21ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]