PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G186900.1.p
Common NameGLYMA_10G186900, LOC100793703
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 142aa    MW: 15963.8 Da    PI: 9.3979
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G186900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2681.8e-211667256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +++GVr+++ +g+++AeIrdps++g   r +lg+f+taeeAa+a+++a+ +l+g+
  Glyma.10G186900.1.p 16 RFRGVRRRP-WGKYAAEIRDPSKQG--SRLWLGTFDTAEEAARAYDRAAFNLRGH 67
                         69*******.**********98865..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.35E-301674No hitNo description
SMARTSM003803.7E-381680IPR001471AP2/ERF domain
PROSITE profilePS5103224.5921674IPR001471AP2/ERF domain
PfamPF008473.6E-151667IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-321675IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-241775IPR016177DNA-binding domain
PRINTSPR003672.0E-111728IPR001471AP2/ERF domain
PRINTSPR003672.0E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MEEHQKGKLQ GKEEVRFRGV RRRPWGKYAA EIRDPSKQGS RLWLGTFDTA EEAARAYDRA  60
AFNLRGHLAI LNFPSEYYSQ IRGSPPYPPH LATPSSSSHA SESTSSAAQQ RHVFEIPCLD  120
DKVLEDLLGL SEEHKKKKKG D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-3251233114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G186900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-142AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535438.11e-101ethylene-responsive transcription factor ERF098
RefseqXP_028182369.11e-101ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC56e-48ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A445IPP71e-100A0A445IPP7_GLYSO; Ethylene-responsive transcription factor ERF098
TrEMBLI1LCB81e-100I1LCB8_SOYBN; Uncharacterized protein
STRINGGLYMA10G33070.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-38ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]