PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G182100.1.p
Common NameGLYMA_10G182100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 186aa    MW: 21090.8 Da    PI: 7.195
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G182100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000722850123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C  C+ +F++   Lk H  +H
  Glyma.10G182100.1.p 28 FRCRLCNHVFPSYQALKAHFESH 50
                         89*****************8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.3E-51550No hitNo description
SMARTSM003550.00972850IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9122850IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MNNIFNNSNQ PSFFNSGQDP HQNNQNGFRC RLCNHVFPSY QALKAHFESH FTLENPAIRN  60
LFSSSHANSQ REMIPNPLQP NFPRPMVMQE TRNFVNRNFQ APPQQPMVMP QYRANLFPCA  120
IQHNVAASQP LQGPPEPQAT QFVNNNVEMA QLLAPPAIHQ MEMEVSPIDG TKPYIDLLDK  180
PINNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G182100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354650.0AC235465.1 Glycine max strain Williams 82 clone GM_WBb0171K17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143246.14e-57hypothetical protein PHAVU_007G056300g
TrEMBLA0A0B2R7W31e-130A0A0B2R7W3_GLYSO; Uncharacterized protein
TrEMBLA0A0R0I3L51e-130A0A0R0I3L5_SOYBN; Uncharacterized protein
STRINGGLYMA20G35127.11e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1431235