PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G171200.1.p
Common NameGLYMA_10G171200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 337aa    MW: 37279.3 Da    PI: 4.7101
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G171200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.46e-28142200159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgynWrKYGqK++kg ++pr+YY+C sagC v+k+ver++ + k+v+ tYeg+Hnhe
  Glyma.10G171200.1.p 142 LDDGYNWRKYGQKVIKGHTYPRAYYKCISAGCYVRKHVERDSCNRKIVINTYEGKHNHE 200
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-29131202IPR003657WRKY domain
PROSITE profilePS5081131.686137202IPR003657WRKY domain
SuperFamilySSF1182901.2E-24139202IPR003657WRKY domain
SMARTSM007746.6E-29142201IPR003657WRKY domain
PfamPF031069.5E-22143200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEGCQPLAPP TQDVAEQVHS SNDAEKVKFR FDLNAKPDEE EEVSAKVGGG SETHAAVSES  60
ADNVGPDNGL ELTLNNDVHP THAADDSDYE EDRASIGEGG SDTENSRKRK RSLEEYKKGT  120
GKSFHGETTV VVQFESKNET ILDDGYNWRK YGQKVIKGHT YPRAYYKCIS AGCYVRKHVE  180
RDSCNRKIVI NTYEGKHNHE QPPPRRKRHQ IQLVDDEEDE DEDEDDGLMT FQFAATGNFL  240
NNPNPAETDQ VHTLQLRNDM NPDQFANGFL SPNNHFGSFN NNINMNIGSS SYTPQMHYYS  300
SLNNTKAMPQ SSYGLNFGSD AAPQPGPSGV PGAGDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-251412021677Probable WRKY transcription factor 4
2lex_A2e-251412021677Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G171200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184916.10.0probable WRKY transcription factor 20
TrEMBLK7LJY10.0K7LJY1_SOYBN; Uncharacterized protein
STRINGGLYMA10G31413.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1873256
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.16e-28WRKY DNA-binding protein 3