PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G171000.1.p
Common NameGLYMA_10G171000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 368aa    MW: 41599 Da    PI: 5.6191
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G171000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.89.1e-28129186259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgy+WrKYGqK +kg  +pr+YY+C+sagC v+k+ver+++++k v+itY g+Hnhe
  Glyma.10G171000.1.p 129 DDGYRWRKYGQKIMKGCLYPRAYYKCASAGCFVRKHVERDSRNNKNVIITYDGRHNHE 186
                          8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-29116188IPR003657WRKY domain
PROSITE profilePS5081131.399123188IPR003657WRKY domain
SuperFamilySSF1182901.31E-24124188IPR003657WRKY domain
SMARTSM007741.0E-29128187IPR003657WRKY domain
PfamPF031065.9E-22129186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEGCQPLAEQ MQSSNDVAKT VKLPLPFDLN TIPKEDEEAR PATSDETWLP DSESDDNFRP  60
LQQPSSTPDA PVDIDDVEDR ASIVEGGSDS GNRKRKRSLE ESDKGTAGRS FHGETELTVR  120
IGSKKEIDDD GYRWRKYGQK IMKGCLYPRA YYKCASAGCF VRKHVERDSR NNKNVIITYD  180
GRHNHEQPPS WITNKNKLVL DDEGDEDDGG EELAPTNNAL MTRNFLMNTP NPAEPQVHTL  240
QLRNDMNPEF ANRFMRPNHF GSLNNNMNIG SSSNNPHMHY SFLNNTNSMP HRSYGVNLDH  300
PYATPQPRGK QVQGTSTRFL KHKQEQDDNK MFGEQANAFY TFSVIVILLS TSFVKVTIVD  360
SYLVFEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-23119188877Probable WRKY transcription factor 4
2lex_A2e-23119188877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G171000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590167.10.0probable WRKY transcription factor 2
TrEMBLA0A0R0HUP30.0A0A0R0HUP3_SOYBN; Uncharacterized protein
STRINGGLYMA10G31413.16e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3588922
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.13e-25WRKY DNA-binding protein 4