PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G160100.1.p
Common NameGLYMA_10G160100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GeBP
Protein Properties Length: 376aa    MW: 43150.5 Da    PI: 5.0107
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G160100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57353.37.9e-17138224297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          + qrl ++eDe+ lL+G +d+ +++     ++++ +   v ++    + ++qlveK+rrLK+K k   +k  ++ke+ f+++++q ife+
  Glyma.10G160100.1.p 138 QYQRLRTKEDEMELLKGYLDYVKQHR----KETTTLLYVVVSC----MITNQLVEKLRRLKRKHKLALEK-GKDKEVPFRNPQEQAIFEI 218
                          579******************65555....3455555555554....4589*******************.8889999************ PP

               DUF573  92 skkiWg 97 
                          s+kiW 
  Glyma.10G160100.1.p 219 SHKIWA 224
                          *****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.1E-16140223IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MHNCHKRTNG YLDTLICEKR KCDISSTMLS RLVSWILSPS SSEEEEEILD IIKDNDINHE  60
NDQKFNVEDD KNDHFLNSCD VDDTIPIALA VPNASPAVTV AFPANDERNT VPTTATVATI  120
VTRSKGQRNA KYSGMVRQYQ RLRTKEDEME LLKGYLDYVK QHRKETTTLL YVVVSCMITN  180
QLVEKLRRLK RKHKLALEKG KDKEVPFRNP QEQAIFEISH KIWANDTDNI IVQDALDGDE  240
SGHTPESHDH VGNVKVKIEQ VDNSDEIGNR VPKRLRLDDA DDMNRTNDQN NGDSIQGFIE  300
DTMRSCFSPL LKEVLDEAQE ESLPELEAIP MPLCSGEVDH EQWRKRRILE LEVYVKRLEL  360
LQNQIKSRLE ELRSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G160100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184907.10.0probable transcription factor At5g28040
TrEMBLA0A0R0I2820.0A0A0R0I282_SOYBN; Uncharacterized protein
STRINGGLYMA10G30180.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630579
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-23DNA-binding storekeeper protein-related transcriptional regulator