PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G160000.1.p
Common NameGLYMA_10G160000, LOC100786620
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GeBP
Protein Properties Length: 373aa    MW: 41285.9 Da    PI: 4.4883
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G160000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731223e-3892187297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          lfqrlw++eDei lLqG++d++a++g+s ++d+  fy+++k+++++ ++k+qlveK+rrLKkK+++ v+k++sgk++sf+++hd+ +fe+
  Glyma.10G160000.1.p  92 LFQRLWTDEDEIGLLQGFLDYTAQRGSSHHSDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVVTKISSGKDVSFKSPHDKATFEI 181
                          79**************************************************************************************** PP

               DUF573  92 skkiWg 97 
                          s++iW 
  Glyma.10G160000.1.p 182 SRRIWS 187
                          *****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.4E-3593187IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MESDLNDAVF PEEDLDDDDD DETPEDEEDY DDETEPPPFV LAVVAVAPPA STASETLDTT  60
LIPISAVADS SLKPLHPELI EEKKALDDSR RLFQRLWTDE DEIGLLQGFL DYTAQRGSSH  120
HSDTALFYDQ IKSKLQLGFN KNQLVEKLRR LKKKYRNVVT KISSGKDVSF KSPHDKATFE  180
ISRRIWSNTA PISGPVEDDD EINPNPNFGN SAKTPISRKR SRPQKRELND GSTLNRDNNC  240
IGNNNNNSNS NNNNNENCNG RHNLQGLIEE TVKSCVSPVL KELVCGTGGM ELGRGFGVGG  300
GLGVGGGLAL NSLQTQMTMP MTLLNLRIGE TTMDEKWRKQ QILELEVYSK RLELVQDEIK  360
VALEELRSAG GV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.438770.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G160000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535363.10.0probable transcription factor At3g04930
RefseqXP_006589177.10.0probable transcription factor At3g04930
SwissprotF4K5T44e-86STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLK7LJR00.0K7LJR0_SOYBN; Uncharacterized protein
STRINGGLYMA10G30160.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.15e-76DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]