PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.10G153800.3.p

Common Name

GLYMA_10G153800, LOC100816217

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 1127aa MW: 126567 Da PI: 9.3371

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G153800.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.6e-10	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ Wk++a+ + +R+ +++ Glyma.10G153800.3.p 46 QWSKEELERFYEAYRKYGKD-WKKVAAVVR-NRSTEMV 81 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.12E-10	41	89	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.392	42	95	IPR017884	SANT domain
SMART	SM00717	6.1E-5	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-5	46	81	IPR009057	Homeodomain-like
Pfam	PF00249	6.6E-9	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	1.01E-6	47	81	No hit	No description
SMART	SM01135	2.8E-55	626	727	IPR033471	DIRP domain
Pfam	PF06584	2.4E-32	626	726	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1127 aa Download sequence Send to blast
MAPTRKSRSV NKRMSSSNDN SPEKDGVNSN KSKQRKRKLT DKLGSQWSKE ELERFYEAYR 60 KYGKDWKKVA AVVRNRSTEM VEALYSMNRA YLSLPEGTAS VVGLIAMMTD HYNVMEGSDS 120 ERESNDAPGS RKPVKRKREK VQLSISKDQS HSIASSDDCL SILKKRRFDG IQLKPHAVGK 180 RTPRVPVYKK DDTENYVSPY RRSLKSTIDA NDDEVAHVVA LALTEAAQRG GSPQVSQTPS 240 RRVEQKSSPI QSWERKHQMS KTARAKFPDV SVDKEVLEGS IESRGAENEE YAKDNSSLMD 300 TEGIDTAEVF QKEGQFYRKR ERVKNVGNHQ LDDGGEACSG TEEGLSFNSL KEKVDIEVTN 360 EKLEKFSPKS HRKRNKKLFF GDETPALNAL QTLADLSLMM PISTMESESS IQLKGERMVA 420 DKNNRSALPE ATSTSHKRHK LKYSVVPKIE VLTSKESKTG KEPTKDTNAL SESKEKLPFA 480 DTAWKRKRKS MGSKVASAKL DSYPSGPLKD EALDDGNKPV VKGKHTDQAF TLPKQLKTVK 540 SSESSLCSDQ KDLTVSTAEI PLLNEVSLPT KQRKRKMILQ RTSLPKEKSS DYILKSQSNK 600 YSTLKEKLSS CLSSNMVRRW FVFEWFYSAI DYPWFAKREF MEYLNHVGLG NIPRLTRVEW 660 SVIKSSLGKP RRFSEHFLCE ERQKLEQYRE SVRKHYTELR TGIRDGLPTD LAKPLYVGQH 720 VIALHPKTRE IHDGSVLTVD YDKCRIQFDR PELGVEFVMD IDCMPLNSSD NMPEALRRHI 780 GSPISSFMNK EPQISGNSNF GGCEMNHSSP VKAKVATVDN LCAQAGCAQP CKVTHHQAKE 840 ADIQAVSELK HALDKKETLL MELRSANSDI LENKNGIDCL KDSEVFKKHY ATVLLQLKEA 900 SGQVSDAMLQ LRQRNTYRGN SLPSWMKPQA SFNVHDDLPS MLDSSLTQEL GSTVVQVIKG 960 SRLRAHAMVD AAFQALSLAK EGEDAFIKIG QALDSINHQQ LASQSRLPVI RSQEQVNANG 1020 SFYHLNHSTS GVSEPILNDP SLPKPHNCSD KFDTELPSDL ITSCVATLIM IQTCTERQYP 1080 PADVAQILDS AVTSLHPCCS QNLPIYREIQ MCMGRIKTQM LALIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1127 aa Download sequence Send to blast

MAPTRKSRSV NKRMSSSNDN SPEKDGVNSN KSKQRKRKLT DKLGSQWSKE ELERFYEAYR  60
KYGKDWKKVA AVVRNRSTEM VEALYSMNRA YLSLPEGTAS VVGLIAMMTD HYNVMEGSDS  120
ERESNDAPGS RKPVKRKREK VQLSISKDQS HSIASSDDCL SILKKRRFDG IQLKPHAVGK  180
RTPRVPVYKK DDTENYVSPY RRSLKSTIDA NDDEVAHVVA LALTEAAQRG GSPQVSQTPS  240
RRVEQKSSPI QSWERKHQMS KTARAKFPDV SVDKEVLEGS IESRGAENEE YAKDNSSLMD  300
TEGIDTAEVF QKEGQFYRKR ERVKNVGNHQ LDDGGEACSG TEEGLSFNSL KEKVDIEVTN  360
EKLEKFSPKS HRKRNKKLFF GDETPALNAL QTLADLSLMM PISTMESESS IQLKGERMVA  420
DKNNRSALPE ATSTSHKRHK LKYSVVPKIE VLTSKESKTG KEPTKDTNAL SESKEKLPFA  480
DTAWKRKRKS MGSKVASAKL DSYPSGPLKD EALDDGNKPV VKGKHTDQAF TLPKQLKTVK  540
SSESSLCSDQ KDLTVSTAEI PLLNEVSLPT KQRKRKMILQ RTSLPKEKSS DYILKSQSNK  600
YSTLKEKLSS CLSSNMVRRW FVFEWFYSAI DYPWFAKREF MEYLNHVGLG NIPRLTRVEW  660
SVIKSSLGKP RRFSEHFLCE ERQKLEQYRE SVRKHYTELR TGIRDGLPTD LAKPLYVGQH  720
VIALHPKTRE IHDGSVLTVD YDKCRIQFDR PELGVEFVMD IDCMPLNSSD NMPEALRRHI  780
GSPISSFMNK EPQISGNSNF GGCEMNHSSP VKAKVATVDN LCAQAGCAQP CKVTHHQAKE  840
ADIQAVSELK HALDKKETLL MELRSANSDI LENKNGIDCL KDSEVFKKHY ATVLLQLKEA  900
SGQVSDAMLQ LRQRNTYRGN SLPSWMKPQA SFNVHDDLPS MLDSSLTQEL GSTVVQVIKG  960
SRLRAHAMVD AAFQALSLAK EGEDAFIKIG QALDSINHQQ LASQSRLPVI RSQEQVNANG  1020
SFYHLNHSTS GVSEPILNDP SLPKPHNCSD KFDTELPSDL ITSCVATLIM IQTCTERQYP  1080
PADVAQILDS AVTSLHPCCS QNLPIYREIQ MCMGRIKTQM LALIPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	571	576	QRKRKM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.19336	0.0	cotyledon\| epicotyl\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G153800.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235362	1e-158	AC235362.1 Glycine max strain Williams 82 clone GM_WBb0099N18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006589140.1	0.0	protein ALWAYS EARLY 2 isoform X4
Refseq	XP_006589141.1	0.0	protein ALWAYS EARLY 2 isoform X4
Refseq	XP_006589142.1	0.0	protein ALWAYS EARLY 2 isoform X4
Refseq	XP_006589143.1	0.0	protein ALWAYS EARLY 2 isoform X4
TrEMBL	K7LJK4	0.0	K7LJK4_SOYBN; Uncharacterized protein
STRING	GLYMA10G29481.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Glyma.10G153800.3.p
Entrez Gene	100816217