PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.10G153800.19.p

Common Name

GLYMA_10G153800

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 1115aa MW: 125271 Da PI: 9.2904

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G153800.19.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.6e-10	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ Wk++a+ + +R+ +++ Glyma.10G153800.19.p 45 QWSKEELERFYEAYRKYGKD-WKKVAAVVR-NRSTEMV 80 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.392	41	94	IPR017884	SANT domain
SuperFamily	SSF46689	1.2E-10	41	88	IPR009057	Homeodomain-like
SMART	SM00717	6.1E-5	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-5	45	80	IPR009057	Homeodomain-like
Pfam	PF00249	6.5E-9	45	80	IPR001005	SANT/Myb domain
CDD	cd00167	9.93E-7	46	80	No hit	No description
SMART	SM01135	2.8E-55	625	726	IPR033471	DIRP domain
Pfam	PF06584	2.4E-32	625	725	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1115 aa Download sequence Send to blast
MAPTRKSRSV NKRMSSSNDN SPEKDGVNSN KSKQRRKLTD KLGSQWSKEE LERFYEAYRK 60 YGKDWKKVAA VVRNRSTEMV EALYSMNRAY LSLPEGTASV VGLIAMMTDH YNVMEGSDSE 120 RESNDAPGSR KPVKRKREKV QLSISKDQSH SIASSDDCLS ILKKRRFDGI QLKPHAVGKR 180 TPRVPVYKKD DTENYVSPYR RSLKSTIDAN DDEVAHVVAL ALTEAAQRGG SPQVSQTPSR 240 RVEQKSSPIQ SWERKHQMSK TARAKFPDVS VDKEVLEGSI ESRGAENEEY AKDNSSLMDT 300 EGIDTAEVFQ KEGQFYRKRE RVKNVGNHQL DDGGEACSGT EEGLSFNSLK EKVDIEVTNE 360 KLEKFSPKSH RKRNKKLFFG DETPALNALQ TLADLSLMMP ISTMESESSI QLKGERMVAD 420 KNNRSALPEA TSTSHKRHKL KYSVVPKIEV LTSKESKTGK EPTKDTNALS ESKEKLPFAD 480 TAWKRKRKSM GSKVASAKLD SYPSGPLKDE ALDDGNKPVV KGKHTDQAFT LPKQLKTVKS 540 SESSLCSDQK DLTVSTAEIP LLNEVSLPTK QRKRKMILQR TSLPKEKSSD YILKSQSNKY 600 STLKEKLSSC LSSNMVRRWF VFEWFYSAID YPWFAKREFM EYLNHVGLGN IPRLTRVEWS 660 VIKSSLGKPR RFSEHFLCEE RQKLEQYRES VRKHYTELRT GIRDGLPTDL AKPLYVGQHV 720 IALHPKTREI HDGSVLTVDY DKCRIQFDRP ELGVEFVMDI DCMPLNSSDN MPEALRRHIG 780 SPISSFMNKE PQISGNSNFG GCEMNHSSPV KAKVATVDNL CAQAGCAQPC KVTHHQAKEA 840 DIQAVSELKH ALDKKETLLM ELRSANSDIL ENKNGIDCLK DSEVFKKHYA TVSDAMLQLR 900 QRNTYRGNSL PSWMKPQASF NVHDDLPSML DSSLTQELGS TVVQVIKGSR LRAHAMVDAA 960 FQALSLAKEG EDAFIKIGQA LDSINHQQLA SQSRLPVIRS QEQVNANGSF YHLNHSTSGV 1020 SEPILNDPSL PKPHNCSDKF DTELPSDLIT SCVATLIMIQ TCTERQYPPA DVAQILDSAV 1080 TSLHPCCSQN LPIYREIQMC MGRIKTQMLA LIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1115 aa Download sequence Send to blast

MAPTRKSRSV NKRMSSSNDN SPEKDGVNSN KSKQRRKLTD KLGSQWSKEE LERFYEAYRK  60
YGKDWKKVAA VVRNRSTEMV EALYSMNRAY LSLPEGTASV VGLIAMMTDH YNVMEGSDSE  120
RESNDAPGSR KPVKRKREKV QLSISKDQSH SIASSDDCLS ILKKRRFDGI QLKPHAVGKR  180
TPRVPVYKKD DTENYVSPYR RSLKSTIDAN DDEVAHVVAL ALTEAAQRGG SPQVSQTPSR  240
RVEQKSSPIQ SWERKHQMSK TARAKFPDVS VDKEVLEGSI ESRGAENEEY AKDNSSLMDT  300
EGIDTAEVFQ KEGQFYRKRE RVKNVGNHQL DDGGEACSGT EEGLSFNSLK EKVDIEVTNE  360
KLEKFSPKSH RKRNKKLFFG DETPALNALQ TLADLSLMMP ISTMESESSI QLKGERMVAD  420
KNNRSALPEA TSTSHKRHKL KYSVVPKIEV LTSKESKTGK EPTKDTNALS ESKEKLPFAD  480
TAWKRKRKSM GSKVASAKLD SYPSGPLKDE ALDDGNKPVV KGKHTDQAFT LPKQLKTVKS  540
SESSLCSDQK DLTVSTAEIP LLNEVSLPTK QRKRKMILQR TSLPKEKSSD YILKSQSNKY  600
STLKEKLSSC LSSNMVRRWF VFEWFYSAID YPWFAKREFM EYLNHVGLGN IPRLTRVEWS  660
VIKSSLGKPR RFSEHFLCEE RQKLEQYRES VRKHYTELRT GIRDGLPTDL AKPLYVGQHV  720
IALHPKTREI HDGSVLTVDY DKCRIQFDRP ELGVEFVMDI DCMPLNSSDN MPEALRRHIG  780
SPISSFMNKE PQISGNSNFG GCEMNHSSPV KAKVATVDNL CAQAGCAQPC KVTHHQAKEA  840
DIQAVSELKH ALDKKETLLM ELRSANSDIL ENKNGIDCLK DSEVFKKHYA TVSDAMLQLR  900
QRNTYRGNSL PSWMKPQASF NVHDDLPSML DSSLTQELGS TVVQVIKGSR LRAHAMVDAA  960
FQALSLAKEG EDAFIKIGQA LDSINHQQLA SQSRLPVIRS QEQVNANGSF YHLNHSTSGV  1020
SEPILNDPSL PKPHNCSDKF DTELPSDLIT SCVATLIMIQ TCTERQYPPA DVAQILDSAV  1080
TSLHPCCSQN LPIYREIQMC MGRIKTQMLA LIPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	570	575	QRKRKM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.19336	0.0	cotyledon\| epicotyl\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G153800.19.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235362	1e-158	AC235362.1 Glycine max strain Williams 82 clone GM_WBb0099N18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014618674.1	0.0	protein ALWAYS EARLY 2 isoform X5
Refseq	XP_014618675.1	0.0	protein ALWAYS EARLY 2 isoform X5
TrEMBL	A0A0R0HTG5	0.0	A0A0R0HTG5_SOYBN; Uncharacterized protein
STRING	GLYMA10G29481.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Glyma.10G153800.19.p