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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G153800.19.p | ||||||||
Common Name | GLYMA_10G153800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 1115aa MW: 125271 Da PI: 9.2904 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.7 | 3.6e-10 | 45 | 80 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ Wk++a+ + +R+ +++ Glyma.10G153800.19.p 45 QWSKEELERFYEAYRKYGKD-WKKVAAVVR-NRSTEMV 80 6*****************99.*********.**98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.392 | 41 | 94 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.2E-10 | 41 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-5 | 42 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 45 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.5E-9 | 45 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.93E-7 | 46 | 80 | No hit | No description |
SMART | SM01135 | 2.8E-55 | 625 | 726 | IPR033471 | DIRP domain |
Pfam | PF06584 | 2.4E-32 | 625 | 725 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1115 aa Download sequence Send to blast |
MAPTRKSRSV NKRMSSSNDN SPEKDGVNSN KSKQRRKLTD KLGSQWSKEE LERFYEAYRK 60 YGKDWKKVAA VVRNRSTEMV EALYSMNRAY LSLPEGTASV VGLIAMMTDH YNVMEGSDSE 120 RESNDAPGSR KPVKRKREKV QLSISKDQSH SIASSDDCLS ILKKRRFDGI QLKPHAVGKR 180 TPRVPVYKKD DTENYVSPYR RSLKSTIDAN DDEVAHVVAL ALTEAAQRGG SPQVSQTPSR 240 RVEQKSSPIQ SWERKHQMSK TARAKFPDVS VDKEVLEGSI ESRGAENEEY AKDNSSLMDT 300 EGIDTAEVFQ KEGQFYRKRE RVKNVGNHQL DDGGEACSGT EEGLSFNSLK EKVDIEVTNE 360 KLEKFSPKSH RKRNKKLFFG DETPALNALQ TLADLSLMMP ISTMESESSI QLKGERMVAD 420 KNNRSALPEA TSTSHKRHKL KYSVVPKIEV LTSKESKTGK EPTKDTNALS ESKEKLPFAD 480 TAWKRKRKSM GSKVASAKLD SYPSGPLKDE ALDDGNKPVV KGKHTDQAFT LPKQLKTVKS 540 SESSLCSDQK DLTVSTAEIP LLNEVSLPTK QRKRKMILQR TSLPKEKSSD YILKSQSNKY 600 STLKEKLSSC LSSNMVRRWF VFEWFYSAID YPWFAKREFM EYLNHVGLGN IPRLTRVEWS 660 VIKSSLGKPR RFSEHFLCEE RQKLEQYRES VRKHYTELRT GIRDGLPTDL AKPLYVGQHV 720 IALHPKTREI HDGSVLTVDY DKCRIQFDRP ELGVEFVMDI DCMPLNSSDN MPEALRRHIG 780 SPISSFMNKE PQISGNSNFG GCEMNHSSPV KAKVATVDNL CAQAGCAQPC KVTHHQAKEA 840 DIQAVSELKH ALDKKETLLM ELRSANSDIL ENKNGIDCLK DSEVFKKHYA TVSDAMLQLR 900 QRNTYRGNSL PSWMKPQASF NVHDDLPSML DSSLTQELGS TVVQVIKGSR LRAHAMVDAA 960 FQALSLAKEG EDAFIKIGQA LDSINHQQLA SQSRLPVIRS QEQVNANGSF YHLNHSTSGV 1020 SEPILNDPSL PKPHNCSDKF DTELPSDLIT SCVATLIMIQ TCTERQYPPA DVAQILDSAV 1080 TSLHPCCSQN LPIYREIQMC MGRIKTQMLA LIPT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 570 | 575 | QRKRKM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.19336 | 0.0 | cotyledon| epicotyl| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G153800.19.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235362 | 1e-158 | AC235362.1 Glycine max strain Williams 82 clone GM_WBb0099N18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014618674.1 | 0.0 | protein ALWAYS EARLY 2 isoform X5 | ||||
Refseq | XP_014618675.1 | 0.0 | protein ALWAYS EARLY 2 isoform X5 | ||||
TrEMBL | A0A0R0HTG5 | 0.0 | A0A0R0HTG5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G29481.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G153800.19.p |